View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_13 (Length: 364)
Name: NF7481_low_13
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 32853438 - 32853793
Alignment:
| Q |
1 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853438 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
32853537 |
T |
|
| Q |
101 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853538 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
32853637 |
T |
|
| Q |
201 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32853638 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaat |
32853737 |
T |
|
| Q |
301 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattgatgtcca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32853738 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtcca |
32853793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 37176574 - 37176929
Alignment:
| Q |
1 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176574 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
37176673 |
T |
|
| Q |
101 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37176674 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttttatcattaatcata |
37176773 |
T |
|
| Q |
201 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37176774 |
gtagagaataacttatttgcatcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctctacttgaat |
37176873 |
T |
|
| Q |
301 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattgatgtcca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37176874 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtcca |
37176929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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