View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_15 (Length: 306)
Name: NF7481_low_15
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 1440015 - 1439745
Alignment:
| Q |
19 |
tcatctgtcaataataagacatagatacgaacataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttc |
118 |
Q |
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| T |
1440015 |
tcatctgtcaataataagacatagatacgaacataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttc |
1439916 |
T |
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| Q |
119 |
tagattgttgcttgagagatcactatattccaagatggccgttgtgttaatttacacatggaaatatattattctagtataaataagaatcaactttgat |
218 |
Q |
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| T |
1439915 |
tagattgttgcttgagagatcactatattccaagatggccgttgtgttaatttacacatggaaatatattattctagtataaataagaatcaactttgat |
1439816 |
T |
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| Q |
219 |
ttcttaaataaaaattctactttgactttaactaacagggaatctaaataaagtagtaacactcacagaac |
289 |
Q |
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| T |
1439815 |
ttcttaaataaaaattctactttgactttaactaacagggaatctaaataaagtagtaacactcacagaac |
1439745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 1453416 - 1453237
Alignment:
| Q |
21 |
atctgtcaataataagacatagatacgaacataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttcta |
120 |
Q |
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| T |
1453416 |
atctgtcaacaataagacatagatatgaacataactatttgccctgacctgataggggtaaatattgaaaatgaaccattcaccgggaaatccccttcta |
1453317 |
T |
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| Q |
121 |
gattgttgcttgagagatcactatattccaagatggccgttgtgttaatttacacatggaaatatattattctagtataa |
200 |
Q |
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| T |
1453316 |
gattattgtttgagacatcactgtattccaagatggccgttgtgtcaatttacacatggaaatatatgattctactataa |
1453237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 1446950 - 1446769
Alignment:
| Q |
19 |
tcatctgtcaataataagacatagatacgaacataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttc |
118 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| |||| |||||| || |||| ||| ||||| |
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| T |
1446950 |
tcatctgtcaacaataagacatagatttgaacataattatttgcacagacctgataggggtaaataatgaaaatgaaccattcactgggaaatccccttc |
1446851 |
T |
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| Q |
119 |
tagattgttgcttgagagatcactatattccaagatggccgttgtgttaatttacacatggaaatatattattctagtataa |
200 |
Q |
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| T |
1446850 |
tagattattgttagagacatcactgtattccaagatggccgttgtgtcagtttatacatggaaatatatgattctactataa |
1446769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 1427678 - 1427526
Alignment:
| Q |
51 |
ataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttctagattgttgcttgagagatcactatattcca |
150 |
Q |
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|||||||| ||||||||||| ||||||||||||| |||| |||||| || |||||| ||||||||||| |||| |||| ||||| || ||||||| |
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| T |
1427678 |
ataattatctgcaccgacctgataggagtaaataatgaaaatgaaccattcactgggacagttccttctagatcgttgtttgaaagatcgctgtattcca |
1427579 |
T |
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| Q |
151 |
agatggccgttgtgttaatttacacatggaaatatattattctagtataaata |
203 |
Q |
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| T |
1427578 |
agatggccgttgtgtcaatttacacatggaaatatatgaatctagtataaata |
1427526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 1434557 - 1434437
Alignment:
| Q |
19 |
tcatctgtcaataataagacatagatacgaacataattatttgcaccgacctagcaggagtaaataataaaaacgaaccactcttggggacatctccttc |
118 |
Q |
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||||||||||| |||||| | || ||| ||||||||| |||| ||| |||| | || |||||||||||||| |||||| || |||| ||| ||||| |
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| T |
1434557 |
tcatctgtcaacaataaggcctaaataagaacataatgatttacactaacctggaagaggtaaataataaaaatgaaccattcactgggatatccccttc |
1434458 |
T |
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| Q |
119 |
tagattgttgcttgagagatc |
139 |
Q |
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|||||||||| |||||||||| |
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| T |
1434457 |
tagattgttgtttgagagatc |
1434437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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