View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_17 (Length: 261)
Name: NF7481_low_17
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 8580726 - 8580986
Alignment:
| Q |
17 |
gatatatgggtagattcagttggaaagnnnnnnncaaggttttttggtctcggatctgcaaacaaaacaatggttacatccgttaaagttctggttaatt |
116 |
Q |
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| T |
8580726 |
gatatatgggtagattcagttggaaagaaaaaagcaaggttttttggtctcggatctgcaaacaaaacaatggttacatccgttaaagttccggttaatt |
8580825 |
T |
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| Q |
117 |
cacaagatgtcaatactttaagaag----------------------tcactgcaaaaacaagaacaagagaaaaagggaaatgaaacaagaattggcct |
194 |
Q |
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| T |
8580826 |
cagaagatgtcaatactttaagaagtcagattcacacacttaacaagtcactgcaaaaacaagaacaagagaaaaagggaaatgaaacaagaattggcct |
8580925 |
T |
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| Q |
195 |
agactagaaaacaagtagttgctttaatgcaacacttaggatttaccggctcttcatctca |
255 |
Q |
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| T |
8580926 |
agactagaaaacaagtagttgctttaatgcaacacttaggatttaccggctcttcttctca |
8580986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 8576974 - 8577071
Alignment:
| Q |
140 |
agtcactgcaaaaacaagaacaagagaaaaagggaaatgaaacaagaattggcctagactagaaaacaagtagttgctttaatgcaacacttaggattt |
238 |
Q |
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| T |
8576974 |
agtcactgcaaaaacaggaacaagagaaattag-aaatgaaacaagagttgaccgagactagaaaacaagtagcagctttaatgcaacacttgggattt |
8577071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 8606507 - 8606594
Alignment:
| Q |
57 |
tttttggtctcggatctgcaaacaaaacaatggttacatccgttaaagttctggttaattcacaagatgtcaatactttaagaagtca |
144 |
Q |
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| T |
8606507 |
tttttggtctcggatctgtaaacaaaacattggttacatctgttaaacttcccattaattcagcagatgtcagtgctttaagaagtca |
8606594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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