View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_18 (Length: 257)
Name: NF7481_low_18
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_18 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 42009723 - 42009467
Alignment:
| Q |
1 |
gactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactcca |
100 |
Q |
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| T |
42009723 |
gactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactcca |
42009624 |
T |
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| Q |
101 |
aatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42009623 |
aatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagcgacact |
42009524 |
T |
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| Q |
201 |
tttcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctga |
257 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42009523 |
tttcacttgttcaaggtccgacatctttttattttcaatttccttctgaatagctga |
42009467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 1245061 - 1244805
Alignment:
| Q |
1 |
gactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactcca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245061 |
gactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactcca |
1244962 |
T |
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| Q |
101 |
aatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1244961 |
aatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacact |
1244862 |
T |
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| Q |
201 |
tttcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctga |
257 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
1244861 |
tttcacttgttcaaggtccgacatctttttattttcaattttcttctgaatagctga |
1244805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 23787589 - 23787504
Alignment:
| Q |
121 |
accaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcac |
206 |
Q |
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|||||||||| ||||| | ||||||| ||| |||||||||||||| ||| || ||||||||||||||| |||| ||| ||||||| |
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| T |
23787589 |
accaagcttcgaagagtgttttcttcatctactactttctgcagtgattctttcgcaccatcaagctccgaagtaacagttttcac |
23787504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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