View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7481_low_2 (Length: 644)

Name: NF7481_low_2
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7481_low_2
NF7481_low_2
[»] chr7 (6 HSPs)
chr7 (67-638)||(26855548-26856119)
chr7 (375-638)||(35213468-35213731)
chr7 (196-230)||(6343503-6343537)
chr7 (381-422)||(4077326-4077367)
chr7 (196-273)||(23887284-23887361)
chr7 (196-273)||(23898460-23898537)
[»] chr6 (5 HSPs)
chr6 (18-638)||(14686693-14687313)
chr6 (196-279)||(14844000-14844083)
chr6 (35-68)||(14843839-14843872)
chr6 (372-423)||(26513774-26513825)
chr6 (196-230)||(15602567-15602601)
[»] chr4 (4 HSPs)
chr4 (165-638)||(20543920-20544392)
chr4 (31-638)||(43516446-43517035)
chr4 (372-424)||(19120126-19120178)
chr4 (196-236)||(9690660-9690700)
[»] chr2 (5 HSPs)
chr2 (21-638)||(11196186-11196803)
chr2 (279-615)||(32624212-32624548)
chr2 (509-638)||(144200-144329)
chr2 (196-230)||(15017919-15017953)
chr2 (381-427)||(18634948-18634994)
[»] chr5 (3 HSPs)
chr5 (371-638)||(21367956-21368223)
chr5 (196-279)||(476407-476490)
chr5 (35-68)||(476618-476651)
[»] chr3 (10 HSPs)
chr3 (30-638)||(34829254-34829862)
chr3 (195-472)||(40513568-40513845)
chr3 (196-279)||(31675124-31675207)
chr3 (196-279)||(31921213-31921296)
chr3 (31-144)||(40513422-40513535)
chr3 (197-236)||(8948881-8948920)
chr3 (35-68)||(31675336-31675369)
chr3 (35-68)||(31921053-31921086)
chr3 (200-232)||(30435294-30435326)
chr3 (372-424)||(53941368-53941420)
[»] chr1 (13 HSPs)
chr1 (31-638)||(13867531-13868120)
chr1 (219-638)||(26510243-26510662)
chr1 (30-284)||(34352612-34352866)
chr1 (31-427)||(45795270-45795648)
chr1 (531-638)||(33150830-33150937)
chr1 (35-289)||(1248287-1248541)
chr1 (32-255)||(5808799-5809022)
chr1 (196-279)||(3544964-3545047)
chr1 (35-68)||(3544803-3544836)
chr1 (86-185)||(26510125-26510224)
chr1 (381-427)||(28357937-28357983)
chr1 (196-230)||(30712742-30712776)
chr1 (372-424)||(52691521-52691573)
[»] chr8 (8 HSPs)
chr8 (80-454)||(9510801-9511175)
chr8 (172-593)||(6245007-6245428)
chr8 (573-638)||(25900869-25900934)
chr8 (19-81)||(6245483-6245545)
chr8 (544-598)||(9510671-9510725)
chr8 (374-427)||(15439214-15439267)
chr8 (374-427)||(15530518-15530571)
chr8 (196-236)||(35528523-35528563)
[»] scaffold0555 (1 HSPs)
scaffold0555 (196-279)||(7862-7945)
[»] scaffold0043 (2 HSPs)
scaffold0043 (196-279)||(34472-34555)
scaffold0043 (35-68)||(34311-34344)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 67 - 638
Target Start/End: Complemental strand, 26856119 - 26855548
Alignment:
Q  67 atacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgatgg 166  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||    
T  26856119 atacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctaatatggttgtctttggtggggagggtgacgg 26856020  T
Q  167 agagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatt 266  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  26856019 agagatgtggggctggaggcgtccgttgagggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcattttgcagcataatatc 26855920  T
Q  267 tatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctt 366  Q
    |  |||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26855919 tccgacaggtggcaatgggactcggattatggtggcggttatagtgtgggaggcgcctatcatcatcttacaactcaagctgaacctccagacgttcctt 26855820  T
Q  367 tgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaag 466  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | |||||| ||||||||||||| |||||| | ||    
T  26855819 tgggagaccttatatggcataagcaggtgccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttag 26855720  T
Q  467 gcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttca 566  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  26855719 gcgtggcataatcaacagcgaggcttgtatgtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttct 26855620  T
Q  567 ttgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtccatctcatt 638  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||| |||||    
T  26855619 ttgtggcatcttatcaggtctttgatcggaatgtcaggtgctgacccttttaatattaatgaccatttcatt 26855548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 638
Target Start/End: Complemental strand, 35213731 - 35213468
Alignment:
Q  375 cttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtggca 474  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||  |||| ||| | |||||| ||||||||||||| || |||||  ||| |||||    
T  35213731 cttatctggcataatcaagtgccgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggca 35213632  T
Q  475 taatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttcattgtggca 574  Q
    | ||   ||||||||||    ||||||| || |||||||  |||| |||| ||   || ||| | ||||| ||||| || ||||| | | | ||||||||    
T  35213631 tcattgttggcgaggcagcattgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggca 35213532  T
Q  575 tcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtccatctcatt 638  Q
    | || |||||| |||||| |||||||| |||| ||| ||  |||||||||||| |||| |||||    
T  35213531 ttttgtcaggtgttggattggaatgtcaggtgttgatccccttaatattgatgaccatttcatt 35213468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 6343503 - 6343537
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtagg 230  Q
    ||||||||||||||||||| |||||||||||||||    
T  6343503 gggtgtgggaggaggagcttttagaggagtgtagg 6343537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 4077367 - 4077326
Alignment:
Q  381 tggcataagcaggtgccgctgaaggtttccatttttgcttgg 422  Q
    |||||||| ||||||||| |||||||||| ||||||||||||    
T  4077367 tggcataaccaggtgccgttgaaggtttctatttttgcttgg 4077326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 23887361 - 23887284
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgaca 273  Q
    ||||||||||||| ||| |||||| ||||||||||  ||| ||||||||| |  || |||||| | ||||||||||||    
T  23887361 gggtgtgggaggaagagatgttagcggagtgtaggaattttattaatggttttattgtgcagcctgatatttatgaca 23887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 23898537 - 23898460
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgaca 273  Q
    ||||||||||||| ||| |||||| ||||||||||  ||| ||||||||| |  || |||||| | ||||||||||||    
T  23898537 gggtgtgggaggaagagatgttagcggagtgtaggaattttattaatggttttattgtgcagcctgatatttatgaca 23898460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Original strand, 14686693 - 14687313
Alignment:
Q  18 atgggggacggtactagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaata 117  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14686693 atgggggacggaactagcacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaata 14686792  T
Q  118 aattgagcactgtggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgtt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||  |||||||| ||| |||||| ||||||||| ||||||||    
T  14686793 aattgagcactgtggctgatatggttgactttggtggggagggtgacggagagatgtgggtctggaggcgtccgttgagggcgtgggaggatgagctgtt 14686892  T
Q  218 agaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtggga 317  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||  |||||||||||  |||||||||||||    
T  14686893 agaggagtgtagggttttaattaatggtgtcattttgcagcataatatctctgacaggtggcaatgggactcgcattctgttggcagttatagtgtggga 14686992  T
Q  318 ggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttg 417  Q
    |||||||||| | ||||||| |||| |  |||  |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  14686993 ggcgcctatctttatcttactactccattggagtctccagacgttcctttgggagaccttatatggcataagcaggtgccgcttaaggtttccatttttg 14687092  T
Q  418 cttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatat 517  Q
    |||||||||||||  | |||||| ||||||||||||| |||||| | |||||||||||||||||  | ||||  |||||||||||||||||||||| | |    
T  14687093 cttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagtgaggtttgtatgtgtgtcacagggtgcggtgt 14687192  T
Q  518 ggaagagactacatctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgaccctttt 617  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14687193 ggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctgaccctttt 14687292  T
Q  618 aatattgatgtccatctcatt 638  Q
    | |||||| | |||| |||||    
T  14687293 actattgaggcccatttcatt 14687313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 14844000 - 14844083
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || |||| ||||||||||  ||| |||||||||| |||||||||  | |||||| |||||||||||    
T  14844000 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 14844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 14843839 - 14843872
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    ||||||||||||||||||||||||||||||||||    
T  14843839 tacttacttttggtatgacaggtggcttggtgat 14843872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 26513825 - 26513774
Alignment:
Q  372 gatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggc 423  Q
    |||||| | |||||||||||||| || || ||||||||||||||||||||||    
T  26513825 gatcttgtttggcataagcaggttcctctaaaggtttccatttttgcttggc 26513774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 15602601 - 15602567
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtagg 230  Q
    ||||||||||||||||||| |||||||||||||||    
T  15602601 gggtgtgggaggaggagcttttagaggagtgtagg 15602567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 165 - 638
Target Start/End: Complemental strand, 20544392 - 20543920
Alignment:
Q  165 ggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataata 264  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  20544392 ggagagatgtggggttggaggcgacggctgagggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcgttt-gcagcataata 20544294  T
Q  265 tttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcc 364  Q
    ||  ||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20544293 ttactgacaggtgacaatgggactctgattctgttggtggttatagtgtgggaggcgtctatcatcatcttacaactcaggcggaacctccagacgttcc 20544194  T
Q  365 tttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttcta 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||    
T  20544193 tttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttcta 20544094  T
Q  465 aggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggtt 564  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  20544093 aggcgtggcataatcaacggcgagacaagtatgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggtt 20543994  T
Q  565 cattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtccatctcatt 638  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||    
T  20543993 cattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgacccctttaatattgatgaccatttcatt 20543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 31 - 638
Target Start/End: Original strand, 43516446 - 43517035
Alignment:
Q  31 ctagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgt 130  Q
    |||||||||||||||||||||||| |||||||||||||   ||||||||||  || ||||||||| | ||||||||||  |||||||| |||||||| ||    
T  43516446 ctagtacttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggt 43516545  T
Q  131 ggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtagg 230  Q
     ||||||||||||                  |||||||||  |||| ||||| ||||   | |||||||||||||||||||  || ||||||||||||||    
T  43516546 agctgatatggtt------------------gatggagaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtagg 43516627  T
Q  231 cttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatc 330  Q
    | |||||||||||||||||||||||||  | |||||| ||| |||||||||||||||| |||||||| | ||| ||| |  ||| |||| | |||||| |    
T  43516628 catttaattaatggtgtcgttttgcagtctgatatttctgagaggtggcaatgggactttgattctgattgcggttacacggtgagaggtgtctatcaac 43516727  T
Q  331 atcttacaactcaagcggaacctccagacgttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattatt 430  Q
    | |  ||| |||| |   |||||||||| | | |  | ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| ||    
T  43516728 aaccgacagctcaggttcaacctccagatgctaccattggagatcttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgtt 43516827  T
Q  431 aagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactaca 530  Q
    | | |||||| ||||||||||||| ||||| ||  |||||||||| |||  |||||||| |    ||||||| || |||||||  |||  | || ||       
T  43516828 atgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcattgtgtgttactgggtgcggcatgacatagtctgtt 43516927  T
Q  531 tctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtcc 630  Q
    |||||| | ||||| ||||| || ||||| ||| | ||||||||| ||||||||| |||||| |||||||| |||||||| ||  |||||||||||| ||    
T  43516928 tctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgacc 43517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 19120178 - 19120126
Alignment:
Q  372 gatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcg 424  Q
    |||||| | |||||||||||||| ||  |||||||||||||||||||||||||    
T  19120178 gatcttgtctggcataagcaggttcctatgaaggtttccatttttgcttggcg 19120126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 9690700 - 9690660
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggctttta 236  Q
    ||||||||||||||||| || |||| |||||||||||||||    
T  9690700 gggtgtgggaggaggagatggtagaagagtgtaggctttta 9690660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 638
Target Start/End: Complemental strand, 11196803 - 11196186
Alignment:
Q  21 ggggacggtactagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaat 120  Q
    ||||| || |||||||||| ||||| | |||| ||||||||||||||||| ||||||||||| || |||||| |||| ||| | ||||| |||||||||     
T  11196803 ggggatggcactagtactttctttttgcatgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaac 11196704  T
Q  121 tgagcactgtggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttaga 220  Q
    |||| || ||||||||||||||||   |||||||||||||||| ||||||  ||||||||||||||||  | |||||||||||||||||||| || ||||    
T  11196703 tgagtacggtggctgatatggttgctattggtggggaggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctaga 11196604  T
Q  221 ggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggc 320  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||||||||||||    
T  11196603 ggagtgtaggcaattaattaatggtgtcgttttgcagcataatatttctgacaggtggcaatgggactctgattctgctggtggttacagtgtgggaggc 11196504  T
Q  321 gcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgctt 420  Q
    | ||||||||| ||||| ||||| || ||||||||||| ||| || | ||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  11196503 gtctatcatcaccttactactcaggctgaacctccagatgttactataggagatcttatctggcataagcaggtgccgctgaaggtttccatttttactt 11196404  T
Q  421 ggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatgga 520  Q
    ||||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| |||||     
T  11196403 ggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttatgtgtgttacagggtgcggtatggc 11196304  T
Q  521 agagactacatctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaat 620  Q
    ||||| | | |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||   |||||    
T  11196303 agagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcagaatgtcaggtgtcgacctccttaat 11196204  T
Q  621 attgatgtccatctcatt 638  Q
    ||||||| |||| |||||    
T  11196203 attgatgaccatttcatt 11196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 279 - 615
Target Start/End: Complemental strand, 32624548 - 32624212
Alignment:
Q  279 caatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatctta 378  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32624548 caatgggactctgattctgttggtggatatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatttta 32624449  T
Q  379 tatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtggcataat 478  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  32624448 tatggcataagcaggtgccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataat 32624349  T
Q  479 caatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttcattgtggcatctt 578  Q
    ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  32624348 caacggcgaggcatgtatgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatctt 32624249  T
Q  579 atcaggtcttggatcggaatgtcgggtgctgaccctt 615  Q
    |||||||||||||| |||||||| |||||||||||||    
T  32624248 atcaggtcttggattggaatgtcaggtgctgaccctt 32624212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 509 - 638
Target Start/End: Original strand, 144200 - 144329
Alignment:
Q  509 gtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgct 608  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  144200 gtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgct 144299  T
Q  609 gacccttttaatattgatgtccatctcatt 638  Q
    |||||||||| |||| ||| |||| |||||    
T  144300 gacccttttactattaatgaccatttcatt 144329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 15017953 - 15017919
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtagg 230  Q
    ||||||||||||||||| |||||||||||||||||    
T  15017953 gggtgtgggaggaggagatgttagaggagtgtagg 15017919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 18634994 - 18634948
Alignment:
Q  381 tggcataagcaggtgccgctgaaggtttccatttttgcttggcgatt 427  Q
    |||||||||||||| ||  |||||||||||||||||||||| |||||    
T  18634994 tggcataagcaggttcctatgaaggtttccatttttgcttgacgatt 18634948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 371 - 638
Target Start/End: Original strand, 21367956 - 21368223
Alignment:
Q  371 agatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgt 470  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  21367956 agatcttatatggcataagtaggtgccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgt 21368055  T
Q  471 ggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttcattgt 570  Q
    ||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21368056 ggcataatcaacggcgaggcatgtaattgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgt 21368155  T
Q  571 ggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtccatctcatt 638  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||    
T  21368156 ggcatcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattgatgaccatttcatt 21368223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 476490 - 476407
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || |||||||||||||||  ||| |||||||||| |||||||||  | |||||| |||||||||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 476651 - 476618
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    ||||||||||||||||||||||||||||||||||    
T  476651 tacttacttttggtatgacaggtggcttggtgat 476618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 30 - 638
Target Start/End: Complemental strand, 34829862 - 34829254
Alignment:
Q  30 actagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactg 129  Q
    |||||||||| ||||||||||||||||||||||||||||   |||||||||||||| || ||||| || ||| || |||  ||||||||| | || || |    
T  34829862 actagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataaactaagtacgg 34829763  T
Q  130 tggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtag 229  Q
    |||||||  ||||||   ||||||||||||||||  ||||| |||||||||||||| ||  | ||||| |||||||||||||| || |||||||||||||    
T  34829762 tggctgacttggttgctcttggtggggaggttgacagagaggtgtggggttggaggagaaggttgaggctgtgggaggaggagatgctagaggagtgtag 34829663  T
Q  230 gcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcat 329  Q
    |   ||| |||||||||| |||||||||  | || ||| |||||||||||||||||||||||||| || ||| | ||| | |||| |||| | ||||||     
T  34829662 gaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttgatggtggttacactgtgagaggtgtctatcaa 34829563  T
Q  330 catcttacaactcaagcggaacctccagacgttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattat 429  Q
    || || | |||||| || || |||||| | | | || ||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||| || |    
T  34829562 caactgaaaactcaggctgatcctccatatggtactatgggagatcttatctggcataagcaggtgctgctgaaggtctccatctttgcttggcggttgt 34829463  T
Q  430 taagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactac 529  Q
    |  | || ||| || ||| ||||||  |||||||||| |||||  ||||||||| ||| | |  ||||||||| ||||||||||  | ||||||| || |    
T  34829462 tgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaagtagttatgtgtgttacagggtgcggcaaggaagagtctgc 34829363  T
Q  530 atctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtc 629  Q
      ||||  | ||||||||||| ||||||||  || |||||||||||| |||||||||||||||||||||||| |||| | |||| ||||||||||||| |    
T  34829362 gcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttaacccctttaatattgatgac 34829263  T
Q  630 catctcatt 638  Q
    ||| |||||    
T  34829262 catttcatt 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 195 - 472
Target Start/End: Original strand, 40513568 - 40513845
Alignment:
Q  195 agggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgatt 294  Q
    |||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||     
T  40513568 agggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttgcagtatgatatttctgacaggtggcaatgggactccgata 40513667  T
Q  295 ctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacg-ttcctttgggagatcttatatggcataagcagg 393  Q
    | | |  || ||| |  ||| | |  |||||||| || ||||||  ||| |   |||||||||| | |||| || || || ||||| |||||||| ||||    
T  40513668 cggattacggttacacggtgagcgatgcctatcaacaacttacagttcaggttcaacctccagatgcttccatt-ggcgaccttatctggcataatcagg 40513766  T
Q  394 tgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtgg 472  Q
    ||||||| ||||||||||||||||||||| |||| ||| | |||||| ||||||||||||| || |||||  |||||||    
T  40513767 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtgg 40513845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 31675207 - 31675124
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || ||||||||||||||   ||| |||||||||| |||||||||  | |||||| |||||||||||    
T  31675207 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 31921213 - 31921296
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || ||||||||||||||   ||| |||||||||| |||||||||  | |||||| |||||||||||    
T  31921213 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31921296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 40513422 - 40513535
Alignment:
Q  31 ctagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgt 130  Q
    ||||||||||||||||||||||||| ||||| ||||||   ||||| ||||  || ||||||||  | ||||||||||  ||| |||| ||||||||  |    
T  40513422 ctagtacttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgat 40513521  T
Q  131 ggctgatatggttg 144  Q
     |||||||||||||    
T  40513522 agctgatatggttg 40513535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 8948881 - 8948920
Alignment:
Q  197 ggtgtgggaggaggagctgttagaggagtgtaggctttta 236  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  8948881 ggtgtgggaggaggagttgtttgaggagtgtaggctttta 8948920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 31675369 - 31675336
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    |||||||||||||||||| |||||||||||||||    
T  31675369 tacttacttttggtatgataggtggcttggtgat 31675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 31921053 - 31921086
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    |||||||||||||||||| |||||||||||||||    
T  31921053 tacttacttttggtatgataggtggcttggtgat 31921086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 30435326 - 30435294
Alignment:
Q  200 gtgggaggaggagctgttagaggagtgtaggct 232  Q
    |||||||||||||||||||| ||||||||||||    
T  30435326 gtgggaggaggagctgttaggggagtgtaggct 30435294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 53941420 - 53941368
Alignment:
Q  372 gatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcg 424  Q
    |||||| | |||||||||||||| || |||||||| ||||||||||| |||||    
T  53941420 gatcttgtttggcataagcaggttcctctgaaggtatccatttttgcatggcg 53941368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 31 - 638
Target Start/End: Original strand, 13867531 - 13868120
Alignment:
Q  31 ctagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgt 130  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||  || ||||||||| | ||||||||||  |||||||| |||||||| ||    
T  13867531 ctagtacttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggt 13867630  T
Q  131 ggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtagg 230  Q
     ||||||||||||||                  |||||||  ||||  |||| ||||   | | |||||||||||||||||  || ||||||||||||||    
T  13867631 agctgatatggttgt------------------tggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtagg 13867712  T
Q  231 cttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatc 330  Q
    |||||||||||||||||||||||||||  | |||||| ||||||||||||||||||||| ||||||| |  || ||| |  |||  ||  |||||||| |    
T  13867713 cttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgggactccgattctgattacggttacacggtgatagatgcctatcaac 13867812  T
Q  331 atcttacaactcaagcggaacctccagacg-ttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattat 429  Q
    | |||||| |||| |   |||||||||| | |||| || || || ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| |    
T  13867813 aacttacagctcaggttcaacctccagatgcttccatt-ggcgaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgt 13867911  T
Q  430 taagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactac 529  Q
    || | |||||| ||||||||||||| || |||||  ||||||| || ||   ||||||||||    ||||||| || ||||| |  |||| |||| ||      
T  13867912 tacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcattgtgtgttactgggtgtggcatggcagagtctgt 13868011  T
Q  530 atctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtc 629  Q
     |||||| | ||| | ||||| || ||||||||| | || |||||| || |||||| |||||| |||||||| |||||||| ||  |||||||||||| |    
T  13868012 ttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgac 13868111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 219 - 638
Target Start/End: Original strand, 26510243 - 26510662
Alignment:
Q  219 gaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggag 318  Q
    |||||||||||||  ||| || ||||||| ||||||||| || || ||| |||||||||||||||||||||||||| || ||| | ||| | |||| |||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggcaatgggactctgattttgctggtggttacactgtgagag 26510342  T
Q  319 gcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgc 418  Q
    |   |||| | || || ||||||||  | || |||||||| | | || ||||||||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  26510343 gtttctataaacaactgacaactcagactgatcctccagatggtactatgggagatcttatctggcataagcaagtgccgctgaaggtctccatctttgc 26510442  T
Q  419 ttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatg 518  Q
    ||| || || ||  | || ||| |||||||||||||  ||||| | || |||||  ||||||||  ||| |||  ||||||||| ||||| ||||  | |    
T  26510443 ttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttatgtgtgttacaggatgcggcaag 26510542  T
Q  519 gaagagactacatctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgaccctttta 618  Q
    |||||| || |  ||||  | ||||||||||| |||| ||| ||| |||||||||||| |||||||||||||||||||||||| |||| |||||| ||||    
T  26510543 gaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgaccccttta 26510642  T
Q  619 atattgatgtccatctcatt 638  Q
    |||| |||| |||| |||||    
T  26510643 atatcgatgaccatttcatt 26510662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 34352866 - 34352612
Alignment:
Q  30 actagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactg 129  Q
    |||||||||| |||||| |||||||||||||||||||||   ||||||||||  || || |||||  | ||| | ||||| ||||||||  ||||||| |    
T  34352866 actagtactttcttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacag 34352767  T
Q  130 tggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtag 229  Q
    | ||| ||||||||| | |||||||||||||||| ||||||  |||||| ||||||||   | |||||||||||||||||||| || |||||||||||||    
T  34352766 tagctaatatggttgcccttggtggggaggttgacggagaggcgtggggctggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtag 34352667  T
Q  230 gcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgg 284  Q
    ||  |||| |||||||||||||||||||  | |||||||||||||||||||||||    
T  34352666 gcaattaactaatggtgtcgttttgcagtctgatatttatgacaggtggcaatgg 34352612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 31 - 427
Target Start/End: Complemental strand, 45795648 - 45795270
Alignment:
Q  31 ctagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgt 130  Q
    ||||||||||||||||||||||||||||||| ||||||   ||||||||||  || ||||||||| | ||||||||||  |||||||| |||||||| ||    
T  45795648 ctagtacttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggt 45795549  T
Q  131 ggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtagg 230  Q
     |||||||||||||                  ||||||||  ||||  |||| ||||   | | |||||||||||||||||  || ||||||||||||||    
T  45795548 agctgatatggttg------------------atggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtagg 45795467  T
Q  231 cttttaattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatc 330  Q
    |||||||||||||||||||||||||||  | |||||| ||||||||||||||||||||| ||||||| | | | ||| |  ||| |||| | |||||| |    
T  45795466 cttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgggactccgattctgattgtggttacacggtgagaggtgtctatcaac 45795367  T
Q  331 atcttacaactcaagcggaacctccagacg-ttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgatt 427  Q
    | || ||| |||| |   |||||||||| | |||| || ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  45795366 aactgacagctcaggttcaacctccagatgcttccatt-ggagaccttatttggcataatcaggtgccgcttaaggtttccatttttgcttggggatt 45795270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 531 - 638
Target Start/End: Complemental strand, 33150937 - 33150830
Alignment:
Q  531 tctcatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtcc 630  Q
    |||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||| ||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgacc 33150838  T
Q  631 atctcatt 638  Q
    || |||||    
T  33150837 atttcatt 33150830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 289
Target Start/End: Original strand, 1248287 - 1248541
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgtggct 134  Q
    ||||||||||||||||||||||||||||||||||   ||| || | || || ||  ||||||| ||| | |||||  ||||||| ||||| || |||||     
T  1248287 tacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgactaataagttgagtacggtggca 1248386  T
Q  135 gatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggcttt 234  Q
    |||||  ||||| ||||| |||||  ||  |||| |  ||||  ||||||| ||||  || |||| |||||||||||||||||||||||||||||||  |    
T  1248387 gatatttttgtccttggttgggagaatggaggaggggcgtggaattggaggagacctttgtgggtatgggaggaggagctgttagaggagtgtaggcaat 1248486  T
Q  235 taattaatggtgtcgttttgcagcataatatttatgacaggtggcaatgggactc 289  Q
    || |||||||||| ||||||||   | |||||| |||||||||||| ||||||||    
T  1248487 tacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactc 1248541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 5809022 - 5808799
Alignment:
Q  32 tagtacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttaatttagcatctaataaattgagcactgtg 131  Q
    |||||| | ||||||||||||||||||||||||||||   |||||||||||||| |  |||||||| ||  | ||| | ||||||||| || | ||  |     
T  5809022 tagtacattcttttggtatgacaggtggcttggtgatgttcctttttgtactaggtatcgtcgtttattggacttaacgtctaataaactgtgtacgata 5808923  T
Q  132 gctgatatggttgtctttggtggggaggttgatggagagatgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggc 231  Q
    ||| ||||| |||    ||||||||| |||| ||||||   ||||||||||||| ||  | || ||||||| ||||||||| ||||| ||||||||||||    
T  5808922 gctaatatgtttgatcctggtggggaagttggtggagaagcgtggggttggaggagaaggttgggggtgtgcgaggaggagatgttaaaggagtgtaggc 5808823  T
Q  232 ttttaattaatggtgtcgttttgc 255  Q
      ||  |||||||||| |||||||    
T  5808822 aattgcttaatggtgttgttttgc 5808799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 3544964 - 3545047
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || |||| ||||||||||  ||| |||||||||| |||||||||  | |||||| |||||||||||    
T  3544964 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 3545047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 3544803 - 3544836
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    ||||||||||||||||||||||||||||||||||    
T  3544803 tacttacttttggtatgacaggtggcttggtgat 3544836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 26510125 - 26510224
Alignment:
Q  86 attccgtcgtttgtttaatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgatggagagatgtggggttggagg 185  Q
    ||||||||| || ||| || |||| ||||||||| | || || ||||||||| ||||||   |||||||| ||||||| ||||||  |||||||||||||    
T  26510125 attccgtcggttatttgatctagcgtctaataaactaagtacggtggctgatttggttgctcttggtgggaaggttgacggagaggcgtggggttggagg 26510224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 28357983 - 28357937
Alignment:
Q  381 tggcataagcaggtgccgctgaaggtttccatttttgcttggcgatt 427  Q
    |||||||||||||| ||  |||||||||||||| |||||||||||||    
T  28357983 tggcataagcaggtccctttgaaggtttccattgttgcttggcgatt 28357937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 30712742 - 30712776
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtagg 230  Q
    ||||||||||||||||||| |||||||||||||||    
T  30712742 gggtgtgggaggaggagcttttagaggagtgtagg 30712776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 52691573 - 52691521
Alignment:
Q  372 gatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcg 424  Q
    |||||| | |||||||||||||| || |||||||| ||||||||||| |||||    
T  52691573 gatcttgtctggcataagcaggttcctctgaaggtatccatttttgcatggcg 52691521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 80 - 454
Target Start/End: Complemental strand, 9511175 - 9510801
Alignment:
Q  80 tactagattccgtcgtttgtttaatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgatggagagatgtggggt 179  Q
    |||||| ||||||||||| ||| |||||   ||||||||| || | || || ||||||||| |||    || |||||| |||| ||||||   |||||||    
T  9511175 tactaggttccgtcgtttatttgatttaatgtctaataaactgtgtacagtagctgatatgtttgatcctgctggggaagttggtggagaagcgtggggt 9511076  T
Q  180 tggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    |||||| ||  | |||||||||||||||||||| ||||||||||||||||||  ||  |||||||||| |||||||||| |||||||| |||||| ||||    
T  9511075 tggaggagaaggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggc 9510976  T
Q  280 aatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatcttat 379  Q
      |||||||||| ||||| ||| | ||| | |||| |||| | |||| | || || ||||| ||||| || |||| ||| ||| ||  ||||||||||||    
T  9510975 tttgggactctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaagctgatcctcaagatgttactacgggagatcttat 9510876  T
Q  380 atggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaa 454  Q
     |||||||||||||||||| | |||||||| || |||||||| || || ||  |||| ||| || ||||||||||    
T  9510875 ctggcataagcaggtgccgttaaaggtttctatctttgcttgacggttgttgcgagacaggttgtcgactaagaa 9510801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 172 - 593
Target Start/End: Complemental strand, 6245428 - 6245007
Alignment:
Q  172 tgtggggttggaggcgaccgctgagggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatga 271  Q
    |||||||||||||| ||  | |||||||||||||||||||| ||||||| |||||||||   ||| |||||||||| ||||||| || | |||||| |||    
T  6245428 tgtggggttggaggagaaggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctga 6245329  T
Q  272 caggtggcaatgggactctgattctgttggcgattatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttggga 371  Q
    || |||||  ||||| |||| ||||| ||| | ||| | |||| |||| | |||| | || || ||||  || || |  |||| ||| ||| ||  ||||    
T  6245328 caagtggctttgggattctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaatgcaggctgttcctcaagatgttactacggga 6245229  T
Q  372 gatcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgattattaagagataggatgccgactaagaaccatcttctaaggcgtg 471  Q
    |||||||| ||||||||||||||||| || |||||||| || ||||||||||||||  |  |||||||| ||| |||||||||  ||||||| ||||| |    
T  6245228 gatcttatttggcataagcaggtgccactaaaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaataatcttctgaggcgcg 6245129  T
Q  472 gcataatcaatggcgaggcatgtatgtgtgtcacagggtgcgatatggaagagactacatctcatctttttattcattgcgccacttttggttcattgtg 571  Q
    || | ||| |||  || |||    | |||||  |||| ||||  ||||||||| | ||  | ||  | ||| |||||||||||||||| ||| |||||||    
T  6245128 gcgtgatcgatgctgaagcagcgttatgtgttgcaggttgcggcatggaagagtccacgacacacttatttcttcattgcgccactttcggtacattgtg 6245029  T
Q  572 gcatcttatcaggtcttggatc 593  Q
    ||||| |||||||| |||||||    
T  6245028 gcatcatatcaggtgttggatc 6245007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 638
Target Start/End: Complemental strand, 25900934 - 25900869
Alignment:
Q  573 catcttatcaggtcttggatcggaatgtcgggtgctgacccttttaatattgatgtccatctcatt 638  Q
    |||| ||| |||||||||||||||||||| |||| |||||| ||||||||||||| |||| |||||    
T  25900934 catcatattaggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcatt 25900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6245545 - 6245483
Alignment:
Q  19 tgggggacggtactagtacttacttttggtatgacaggtggcttggtgatacacctttttgta 81  Q
    ||||||| || |||||||||| |||||||||||| |||||||||||||||   ||||||||||    
T  6245545 tgggggatggcactagtactttcttttggtatgataggtggcttggtgatgttcctttttgta 6245483  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 9510725 - 9510671
Alignment:
Q  544 ttcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaat 598  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||    
T  9510725 ttcattgcgccactttcagtacattgtggcatcatatcaggtgttggatcggaat 9510671  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 15439267 - 15439214
Alignment:
Q  374 tcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgatt 427  Q
    |||||| |||||||| ||||| ||  ||||||| ||||||||||||||||||||    
T  15439267 tcttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgatt 15439214  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 15530571 - 15530518
Alignment:
Q  374 tcttatatggcataagcaggtgccgctgaaggtttccatttttgcttggcgatt 427  Q
    |||||| |||||||| ||||| ||  ||||||| ||||||||||||||||||||    
T  15530571 tcttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgatt 15530518  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 35528563 - 35528523
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggctttta 236  Q
    |||||| |||||||||||||||||| |||||||| ||||||    
T  35528563 gggtgtaggaggaggagctgttagaagagtgtagactttta 35528523  T

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Target: scaffold0555 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 7945 - 7862
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || |||||||||||||||  ||| |||||| ||| |||||||||  | |||||| |||||||||||    
T  7945 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggc 7862  T

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Target: scaffold0043 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 34472 - 34555
Alignment:
Q  196 gggtgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcgttttgcagcataatatttatgacaggtggc 279  Q
    ||||||||||||||||| || |||||||||||||||  ||| |||||||||| ||||| |||  | |||||| |||||||||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggc 34555  T

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Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 34311 - 34344
Alignment:
Q  35 tacttacttttggtatgacaggtggcttggtgat 68  Q
    ||||||||||||||||||||||||||||||||||    
T  34311 tacttacttttggtatgacaggtggcttggtgat 34344  T

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