View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_24 (Length: 222)
Name: NF7481_low_24
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 18446363 - 18446573
Alignment:
| Q |
1 |
accattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18446363 |
accattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaatgaccatagagagttc |
18446462 |
T |
|
| Q |
101 |
caagtgaagagaagatgtatagggattgacatattcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttcctc |
200 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18446463 |
caagtgaagagaagatgtatagggattgacagaatcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttcctc |
18446562 |
T |
|
| Q |
201 |
tgcctattcat |
211 |
Q |
| |
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||||||||||| |
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| T |
18446563 |
tgcctattcat |
18446573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 36404127 - 36404338
Alignment:
| Q |
1 |
accattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
36404127 |
accattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaatgaccatagggagttc |
36404226 |
T |
|
| Q |
101 |
caagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttcct |
199 |
Q |
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|||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36404227 |
caagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctcttcct |
36404326 |
T |
|
| Q |
200 |
ctgcctattcat |
211 |
Q |
| |
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|||||||||||| |
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| T |
36404327 |
ctgcctattcat |
36404338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 55353501 - 55353290
Alignment:
| Q |
1 |
accattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55353501 |
accattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaatgaccatagggagttt |
55353402 |
T |
|
| Q |
101 |
caagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttcct |
199 |
Q |
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||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55353401 |
caaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcttcttcct |
55353302 |
T |
|
| Q |
200 |
ctgcctattcat |
211 |
Q |
| |
|
|||||||||||| |
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|
| T |
55353301 |
ctgcctattcat |
55353290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29607430 - 29607643
Alignment:
| Q |
1 |
accattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa---tgaccatagagag |
97 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||| ||||||||| |||||| || ||| |
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| T |
29607430 |
accattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttt-tgcttaaaaaattgaccacagggag |
29607528 |
T |
|
| Q |
98 |
ttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtcattacaaaagtcctctt |
196 |
Q |
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|||||||||| ||| ||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
29607529 |
ttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtcattacaacagtcctctt |
29607628 |
T |
|
| Q |
197 |
cctctgcctattcat |
211 |
Q |
| |
|
|||||| | |||||| |
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|
| T |
29607629 |
cctctgtccattcat |
29607643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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