View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_26 (Length: 216)
Name: NF7481_low_26
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8193309 - 8193094
Alignment:
| Q |
1 |
catggtgatacaaaatcataccgactcataaatgtatcagcgcaactcaaagcaacctaggatccatcacatgaaacaaatttctggttttccaaattgg |
100 |
Q |
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| T |
8193309 |
catggtgatacaaaataataccgactcataaatgtatcagcgcaactcaaagcaacctaggatccatcacatgaaacaaatttctggttttccaaattgg |
8193210 |
T |
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| Q |
101 |
attgcaatccacaattctaaagaccatactgaaacaagacgtggaggcattaaaaaagaaaagcacttggtaagaaaagtgggacccaaacttccatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8193209 |
attgcaatccacaattctaaagaccatactgaaacaagacatggaggcattaaaaaggaaaagcacttggtaagaaaagtgagacccaaacttccatcct |
8193110 |
T |
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| Q |
201 |
ttccccagatatatga |
216 |
Q |
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|||||||||||||||| |
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| T |
8193109 |
ttccccagatatatga |
8193094 |
T |
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