View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_4 (Length: 486)
Name: NF7481_low_4
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 174 - 466
Target Start/End: Original strand, 8448563 - 8448855
Alignment:
| Q |
174 |
gacaacaattagccccttggatagcaggctctccaagcgtcgttctgcagcagatttttcattccctcaggcgcggacaggtgatagctagagcagaatc |
273 |
Q |
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| T |
8448563 |
gacaacaattagcccctcggatagcagactctccaagcgtcgttctgcagcagatttttcattccctcaggcgcggacaggtgatagctagagcagaatc |
8448662 |
T |
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| Q |
274 |
agaggaagctccaatcttaaccaaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttggatgacagcaggtctgtaata |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448663 |
agaggaagctccaatcttaaccaaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttggatgacagcaggtctgtaata |
8448762 |
T |
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| Q |
374 |
tcatcgatgagagcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattcg |
466 |
Q |
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| T |
8448763 |
tcatcgatgagagcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattcg |
8448855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 8448403 - 8448499
Alignment:
| Q |
14 |
acctgtgaattctgtctctaagcaccggatggacaataatttgtcactgttgaagatcataatttgcttcattgactaggttttttggttacaaggg |
110 |
Q |
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| T |
8448403 |
acctgtaaattctgtctctaagcaccggatggacaacaatttgtcactgttgaagatcataatttgcttcattgactaggttttttggttacaaggg |
8448499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 8454048 - 8454092
Alignment:
| Q |
42 |
atggacaataatttgtcactgttgaagatcataatttgcttcatt |
86 |
Q |
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| T |
8454048 |
atggacaacaatctgtcactgttgaagatcatcacttgcttcatt |
8454092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 465
Target Start/End: Complemental strand, 28046632 - 28046553
Alignment:
| Q |
386 |
gcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattc |
465 |
Q |
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| T |
28046632 |
gcagcataagtgtgaaaattcatggctggtcctgtaatgagatttaagcaaagaagggagtcgttgtaacacacaaattc |
28046553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 4348784 - 4348842
Alignment:
| Q |
296 |
aaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttgga |
354 |
Q |
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||||||||| ||||||| ||||||||||||| |||||| |||||| |||| |||||||| |
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| T |
4348784 |
aaaaaatcaacgcattgattaccctcccgcaaagtgtgaaagattaaagtgttgttgga |
4348842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 40557097 - 40557184
Alignment:
| Q |
265 |
agcagaatcagaggaagctccaatcttaaccaaaaaatcagcgcattggtta-ccctcccgcagagtgtggaagattgaagtattgttg |
352 |
Q |
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|||| |||| || |||||||| | |||| |||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
40557097 |
agcaaaatctgaagaagctcctagtttaaacaaaaaatcaacgcattggttacccctcccgca-tgtgtgaaagattgaagtattgttg |
40557184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 30912782 - 30912893
Alignment:
| Q |
234 |
attccctcaggcgcggacaggtg-atagctagagcagaatcagaggaagctccaatcttaaccaaaaaatcagcgcattggttaccctcccgcagagtgt |
332 |
Q |
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|||||||||||||| |||||||| |||| | |||||||| || ||||||| | |||| |||||| |||| ||||||| ||||||||||| |||||| |
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| T |
30912782 |
attccctcaggcgcagacaggtggatagacaacgcagaatctgaaaaagctcctaacttagccaaaagatcaatgcattgggtaccctcccgcggagtgt |
30912881 |
T |
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| Q |
333 |
ggaagattgaag |
344 |
Q |
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| T |
30912882 |
gaaagatagaag |
30912893 |
T |
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