View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_8 (Length: 439)
Name: NF7481_low_8
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 3591991 - 3592424
Alignment:
| Q |
1 |
ttggttcacttttttcttttagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaacatggttttaaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591991 |
ttggttcacttttttcttgtagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaacatggttttaaat |
3592090 |
T |
|
| Q |
101 |
tgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgcatttacgatttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592091 |
tgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgcatttacgatttaa |
3592190 |
T |
|
| Q |
201 |
aacttaagtccacaatataaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagcaataactgcattt |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3592191 |
aacttaagtccacaatatgaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagcgataactgcattt |
3592290 |
T |
|
| Q |
301 |
ccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagat----caaacaatctaagcaacagttatccaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3592291 |
ccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagatcgaccaaacaatctaagcaacagttatccaa |
3592390 |
T |
|
| Q |
397 |
aagtttatggatactaatgtcatgatgtccatct |
430 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
3592391 |
aagtttatggatactaatgtcatgatggccatct |
3592424 |
T |
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