View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7482_high_1 (Length: 366)
Name: NF7482_high_1
Description: NF7482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7482_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 2488045 - 2488405
Alignment:
| Q |
1 |
ctgagagtcagacagtagctagagaaccacgaataaggtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgattgag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488045 |
ctgagagacagacagtagctagagaaccacgaataaggtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgattgag |
2488144 |
T |
|
| Q |
101 |
actgcatcagtcgcatttgactgcaattctacgcaatattaataattacattgcattgtt-----------ttctatcttatgtttacatcaagtaattt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2488145 |
actgcatcagtcgcatttgactgcaattctacgcaatattaataattacattgcattgttttgagtatgttttctatcttatgtttacatcaagtaattt |
2488244 |
T |
|
| Q |
190 |
tcgacgtgtttgttaatttcttactgagttcatgttccacacagttctaatgctacctatgaagatatacttgggaataacaagcctttcccccaaccta |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488245 |
tcgacgtgtttgttaatttcttactgagttcatgttccacacagttctaatgctacctatgaagatatacttgggaataacaagcctttcccccaaccta |
2488344 |
T |
|
| Q |
290 |
tccctctaagagtatgattttatgaactttattcttcaattattgatattctagtaataaa |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488345 |
tccctctaagagtatgattttatgaactttattcttcaattattgatattctagtaataaa |
2488405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University