View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7482_high_4 (Length: 277)
Name: NF7482_high_4
Description: NF7482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7482_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 42812624 - 42812820
Alignment:
| Q |
18 |
agaattcttcaggagttagggttccgaaggggctatgatcgttggcttctgctactgggtgcaccattttggatatcttctactatcagttagttatgtg |
117 |
Q |
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| T |
42812624 |
agaattcttcaggagttagggttccgaaggggctatgatcgttggcttctgctattgggtgcaccattttggatattaact-----cactcagttatgtg |
42812718 |
T |
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| Q |
118 |
tggatatagttatagtttgagtttcggctataatcagcgtgtcccaactagttcttccacttttctccccttcatttacttctctacttgcttttcactt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42812719 |
tggatatagttatagtttgagtttcggctataatcagcgtgtcccaactagttcttcgacttttctccccttcatttacttctctacttgcttttcactt |
42812818 |
T |
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