View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7482_high_6 (Length: 222)
Name: NF7482_high_6
Description: NF7482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7482_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 45181419 - 45181615
Alignment:
| Q |
19 |
atcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatc |
118 |
Q |
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| T |
45181419 |
atcagtcatgatatccaattggttcttcctatttgtccgaggaaacaatggcctcccagtaagcacttctgcaaa-tatgcatccaatgctccaaatatc |
45181517 |
T |
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| Q |
119 |
aattccaggggtataccgcataagacaaggattataaattacatgc-----------atatttcaatacatcaagtgtagtcaccttgatcttgtatc |
205 |
Q |
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| T |
45181518 |
aattccaggggtataccgcataagacaaggattataaattacatgcatatataatatatatttcaatacatcaagtgtagtcaccttgatcttgtatc |
45181615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 45174527 - 45174690
Alignment:
| Q |
19 |
atcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatc |
118 |
Q |
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| T |
45174527 |
atcagtcatgatatccaattgatgcaccacatttttcccaggaaacaatggcctcccagtaagcatttctgcaaa-tatgcatccaatgctccaaatatc |
45174625 |
T |
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| Q |
119 |
aattccaggggtataccgcataagacaaggattataaattacatgcatatttcaatacatcaagt |
183 |
Q |
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| T |
45174626 |
aattccaggtgtatactgcataagaaagggaatataaattacatacatatttcaatacatcaagt |
45174690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 29961525 - 29961651
Alignment:
| Q |
49 |
atttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaagg |
148 |
Q |
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| T |
29961525 |
atttttcccaggaaacaatggcttgccactaagcatttctgcaaa-tatgcatccaatgctccaaatatcaatcgctggagtatactgcaaaagacaaga |
29961623 |
T |
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| Q |
149 |
attataaattacatgcatatttcaatac |
176 |
Q |
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| T |
29961624 |
atttgaaattacatacatatttcaatac |
29961651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 30814788 - 30814718
Alignment:
| Q |
56 |
ccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccagg |
127 |
Q |
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| T |
30814788 |
ccaggaaacaatggctttcctgtaagcacttccgcaaaa-atgcaaccaatgctccatatatcaattgcagg |
30814718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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