View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7482_low_4 (Length: 322)
Name: NF7482_low_4
Description: NF7482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7482_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31229851 - 31229529
Alignment:
| Q |
1 |
caagccatatcatatcaactgatgcccattccagcatgaaattgagaaacatttgtaaatcataacatctagccttaatgcagcccctaattagagagca |
100 |
Q |
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| T |
31229851 |
caagccatatcatatcaactgatgcccattccagcatgaaattgagaaacatttgtaaatcataacatctagccttaatgcagcccctaattagagagca |
31229752 |
T |
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| Q |
101 |
tcattgatgcgagagaacacctcctcctaaagctcatcatattatgtgcatataagtttcatcttttgatataaacatgtttgcgtggatttaaacgaaa |
200 |
Q |
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| T |
31229751 |
tcattgatgcgagagaacacctcctcctaaagctcatcatattatgtgcatataagtttcatcttttgatataaacatgtttgcgtggatttaaacgaaa |
31229652 |
T |
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| Q |
201 |
ttataaaaataccttgtgatatggtcattagttgtttgtaactt--ttttattttaatagctctcatgatagcttgtagtatcaacttgtggaaacttat |
298 |
Q |
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| T |
31229651 |
ttataaaaataccttgtcatatggtcattagttgtttgtaacttacttttattttaatagctctcatgatagcttgtagtatcaacttgtggaaacttat |
31229552 |
T |
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| Q |
299 |
gttgaatttatccttgttttcttt |
322 |
Q |
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||||||||||| |||||||||||| |
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| T |
31229551 |
gttgaatttat-cttgttttcttt |
31229529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 31178912 - 31178843
Alignment:
| Q |
74 |
cttaatgcagcccctaattagagagcatcattgatgcgagagaacacctcctcctaaagctcatcatatt |
143 |
Q |
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| T |
31178912 |
cttaatgaagtccctatttagagagctccatggatacgagacaacacctccccctaaagctcatcatatt |
31178843 |
T |
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