View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7482_low_6 (Length: 265)

Name: NF7482_low_6
Description: NF7482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7482_low_6
NF7482_low_6
[»] chr4 (10 HSPs)
chr4 (18-265)||(155408-155657)
chr4 (224-263)||(15092109-15092148)
chr4 (224-265)||(16597885-16597926)
chr4 (223-263)||(10633-10673)
chr4 (224-263)||(8847610-8847649)
chr4 (224-263)||(43197486-43197525)
chr4 (222-263)||(14039885-14039926)
chr4 (224-258)||(15463750-15463784)
chr4 (224-261)||(14927566-14927603)
chr4 (231-263)||(12286978-12287010)
[»] chr5 (8 HSPs)
chr5 (18-214)||(34415818-34416016)
chr5 (224-263)||(22958380-22958419)
chr5 (224-263)||(21328361-21328400)
chr5 (224-263)||(22145299-22145338)
chr5 (224-259)||(19670102-19670137)
chr5 (224-263)||(20025691-20025730)
chr5 (224-263)||(21985054-21985093)
chr5 (224-265)||(26739454-26739495)
[»] scaffold0162 (1 HSPs)
scaffold0162 (219-263)||(25076-25120)
[»] scaffold0333 (1 HSPs)
scaffold0333 (224-263)||(15190-15229)
[»] chr3 (13 HSPs)
chr3 (224-263)||(9772905-9772944)
chr3 (224-263)||(1643501-1643540)
chr3 (224-263)||(14454466-14454505)
chr3 (224-263)||(15472167-15472206)
chr3 (224-263)||(20697264-20697303)
chr3 (224-263)||(32308897-32308936)
chr3 (223-263)||(43843445-43843485)
chr3 (231-263)||(49666934-49666966)
chr3 (224-263)||(13209146-13209185)
chr3 (224-263)||(40212540-40212579)
chr3 (221-265)||(1464283-1464326)
chr3 (221-265)||(3401772-3401816)
chr3 (223-263)||(25468766-25468806)
[»] chr1 (6 HSPs)
chr1 (224-263)||(22920693-22920732)
chr1 (224-263)||(33682272-33682311)
chr1 (224-259)||(21747220-21747255)
chr1 (224-257)||(21856697-21856730)
chr1 (223-263)||(16759970-16760010)
chr1 (223-255)||(46560549-46560581)
[»] chr7 (11 HSPs)
chr7 (221-263)||(16218538-16218580)
chr7 (224-261)||(12254614-12254651)
chr7 (224-263)||(10589964-10590003)
chr7 (224-263)||(18006898-18006937)
chr7 (224-263)||(809966-810005)
chr7 (232-263)||(3563219-3563250)
chr7 (224-263)||(15753713-15753752)
chr7 (224-263)||(16057588-16057627)
chr7 (224-259)||(44015443-44015478)
chr7 (220-265)||(14195503-14195548)
chr7 (222-265)||(41526625-41526669)
[»] chr6 (8 HSPs)
chr6 (221-263)||(25645560-25645602)
chr6 (224-263)||(22079370-22079409)
chr6 (224-263)||(27332145-27332184)
chr6 (224-263)||(27392885-27392924)
chr6 (230-263)||(23022603-23022636)
chr6 (224-263)||(1562559-1562598)
chr6 (224-263)||(20360290-20360329)
chr6 (224-263)||(20595015-20595054)
[»] scaffold0876 (1 HSPs)
scaffold0876 (222-263)||(1897-1938)
[»] scaffold0556 (1 HSPs)
scaffold0556 (222-263)||(8049-8090)
[»] chr2 (3 HSPs)
chr2 (222-263)||(23287114-23287155)
chr2 (224-263)||(23653226-23653265)
chr2 (224-263)||(24078153-24078192)
[»] scaffold0211 (1 HSPs)
scaffold0211 (223-263)||(27783-27823)
[»] scaffold0075 (1 HSPs)
scaffold0075 (223-263)||(50356-50396)
[»] chr8 (10 HSPs)
chr8 (223-263)||(16091162-16091202)
chr8 (224-263)||(7464562-7464601)
chr8 (230-263)||(23759684-23759717)
chr8 (218-263)||(26354508-26354553)
chr8 (231-263)||(21287470-21287502)
chr8 (223-263)||(21674924-21674964)
chr8 (224-263)||(6521631-6521670)
chr8 (224-263)||(22876326-22876365)
chr8 (224-265)||(20985346-20985387)
chr8 (224-265)||(38854076-38854117)
[»] scaffold1326 (1 HSPs)
scaffold1326 (224-263)||(175-214)
[»] scaffold0894 (1 HSPs)
scaffold0894 (224-263)||(836-875)
[»] scaffold0775 (1 HSPs)
scaffold0775 (224-263)||(4798-4837)
[»] scaffold0621 (1 HSPs)
scaffold0621 (224-263)||(7804-7843)
[»] scaffold0507 (1 HSPs)
scaffold0507 (224-263)||(7057-7096)
[»] scaffold0320 (1 HSPs)
scaffold0320 (224-263)||(13270-13309)
[»] scaffold0273 (1 HSPs)
scaffold0273 (224-263)||(8292-8331)
[»] scaffold0163 (1 HSPs)
scaffold0163 (224-263)||(26040-26079)
[»] scaffold0151 (1 HSPs)
scaffold0151 (224-263)||(11408-11447)
[»] scaffold0122 (2 HSPs)
scaffold0122 (224-263)||(32313-32352)
scaffold0122 (224-263)||(24882-24921)
[»] scaffold0100 (1 HSPs)
scaffold0100 (224-263)||(23323-23362)
[»] scaffold0078 (1 HSPs)
scaffold0078 (224-263)||(11789-11828)
[»] scaffold0024 (1 HSPs)
scaffold0024 (224-263)||(100430-100469)
[»] scaffold0637 (1 HSPs)
scaffold0637 (221-259)||(3248-3286)
[»] scaffold0020 (1 HSPs)
scaffold0020 (225-263)||(14667-14705)
[»] scaffold0628 (1 HSPs)
scaffold0628 (224-261)||(1696-1733)
[»] scaffold0070 (1 HSPs)
scaffold0070 (230-263)||(5796-5829)
[»] scaffold0145 (1 HSPs)
scaffold0145 (223-263)||(8517-8557)
[»] scaffold0021 (1 HSPs)
scaffold0021 (223-263)||(71402-71442)
[»] scaffold0490 (1 HSPs)
scaffold0490 (224-263)||(3175-3214)
[»] scaffold0346 (1 HSPs)
scaffold0346 (224-263)||(16550-16589)
[»] scaffold0324 (1 HSPs)
scaffold0324 (224-263)||(666-705)
[»] scaffold0278 (1 HSPs)
scaffold0278 (224-259)||(9479-9514)
[»] scaffold0231 (1 HSPs)
scaffold0231 (224-259)||(11670-11705)
[»] scaffold0228 (3 HSPs)
scaffold0228 (224-263)||(5745-5784)
scaffold0228 (224-263)||(13327-13366)
scaffold0228 (224-263)||(23279-23318)
[»] scaffold0207 (1 HSPs)
scaffold0207 (224-259)||(1461-1496)
[»] scaffold0084 (1 HSPs)
scaffold0084 (224-263)||(11421-11460)
[»] scaffold0056 (1 HSPs)
scaffold0056 (224-263)||(16031-16070)
[»] scaffold0012 (1 HSPs)
scaffold0012 (224-263)||(228740-228779)
[»] scaffold0555 (1 HSPs)
scaffold0555 (233-263)||(9395-9425)
[»] scaffold1800 (1 HSPs)
scaffold1800 (222-259)||(283-320)
[»] scaffold0309 (1 HSPs)
scaffold0309 (231-263)||(7841-7873)
[»] scaffold0247 (1 HSPs)
scaffold0247 (223-263)||(5643-5683)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 155657 - 155408
Alignment:
Q  18 gaaatcaggtttatcgtttcaacgttttatgaccaagttgtgacgttgtcagctcatccatatagttgtcgtgttatacaggtgacatatccatcctttt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  155657 gaaatcaggtttatcgtttcaacgttttataaccaagttgtgacgttgtcagctcatccatatagctgtcgtgttatacaggtgacatatccatcctttt 155558  T
Q  118 tattttatttgtgtgaacacatttactgaattgataataactggcaagagac--tgattctaaactagttaagttttgataagcagagagtcttggagtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  155557 tattttatttgtgtgaacacatttactgaattgataataactggcaagaaactatgattctaaactagttaagttttgataagcagagagtcttggagtg 155458  T
Q  216 gtgtcatgtgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||| ||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  155457 gtgccatatgtaacgccctctttaaattatttaattatttaattgagttt 155408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 15092148 - 15092109
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15092148 tgtaatgccctctttgaattatttaattatttaattgagt 15092109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 16597926 - 16597885
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  16597926 tgtaacgccctctttgaattatttaattatttaattgagttt 16597885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 10633 - 10673
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10633 gtgtaacgccctctttgaattatttaattatttaattgagt 10673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 8847649 - 8847610
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8847649 tgtaacgccctctttgaattatttaattatttaattgagt 8847610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 43197486 - 43197525
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  43197486 tgtaacgccctctttgaattatttaattatttaattgagt 43197525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 14039926 - 14039885
Alignment:
Q  222 tgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  14039926 tgtgtaacgccctctttgaattatttaattatttgattgagt 14039885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 15463750 - 15463784
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaat 258  Q
    ||||| |||||||||||||||||||||||||||||    
T  15463750 tgtaacgccctctttgaattatttaattatttaat 15463784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 14927566 - 14927603
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattga 261  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  14927566 tgtaacgccctctttgaatgatttaattatttaattga 14927603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 12286978 - 12287010
Alignment:
Q  231 ccctctttgaattatttaattatttaattgagt 263  Q
    |||||||||||||||||||||||||| ||||||    
T  12286978 ccctctttgaattatttaattatttagttgagt 12287010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 34415818 - 34416016
Alignment:
Q  18 gaaatcaggtttatcgtttcaacgttttatgaccaagttgtgacgttgtcagctcatccatatagttgtcgtgttatacaggtgacatatccatcctttt 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| || |||||||||    
T  34415818 gaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggtgacaaattcatcctttt 34415917  T
Q  118 tattttatttgtgtgaacacatttactgaattgataataactggcaagagac--tgattctaaactagttaagttttgataagcagagagtcttggagt 214  Q
     ||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||| ||||| ||||||||||||||||||||||||||||    
T  34415918 gattttatttgtgtgaacacatttactgaattgaaaataactggccagagactatgattctaaattagttgagttttgataagcagagagtcttggagt 34416016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 22958380 - 22958419
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22958380 tgtaatgccctctttgaattatttaattatttaattgagt 22958419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 21328361 - 21328400
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  21328361 tgtaacgccctctttgaattatttaattatttaattgagt 21328400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 22145338 - 22145299
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  22145338 tgtaacgccctctttgaattatttaattatttaattgagt 22145299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 19670137 - 19670102
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19670137 tgtaacgccctctttgaattatttaattatttaatt 19670102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 20025691 - 20025730
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  20025691 tgtaacgcccactttgaattatttaattatttaattgagt 20025730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 21985054 - 21985093
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  21985054 tgtaacgccctatttgaattatttaattatttaattgagt 21985093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 26739454 - 26739495
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||| ||||||||||||||||||||||||||  ||||||||    
T  26739454 tgtaacgccctctttgaattatttaattattttgttgagttt 26739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 25076 - 25120
Alignment:
Q  219 tcatgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  25076 tcatgtgtaacgccctctttgaattatttaattatttaattgagt 25120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 15229 - 15190
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15229 tgtaatgccctctttgaattatttaattatttaattgagt 15190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 9772905 - 9772944
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9772905 tgtaatgccctctttgaattatttaattatttaattgagt 9772944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 1643501 - 1643540
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1643501 tgtaacgccctctttgaattatttaattatttaattgagt 1643540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 14454505 - 14454466
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14454505 tgtaacgccctctttgaattatttaattatttaattgagt 14454466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 15472206 - 15472167
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  15472206 tgtaacgccctctttgaattatttaattatttaattgagt 15472167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 20697264 - 20697303
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  20697264 tgtaacgccctctttgaattatttaattatttaattgagt 20697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 32308936 - 32308897
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  32308936 tgtaacgccctctttgaattatttaattatttaattgagt 32308897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 43843485 - 43843445
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  43843485 gtgtaacgccctccttgaattatttaattatttaattgagt 43843445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 49666934 - 49666966
Alignment:
Q  231 ccctctttgaattatttaattatttaattgagt 263  Q
    |||||||||||||||||||||||||||||||||    
T  49666934 ccctctttgaattatttaattatttaattgagt 49666966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 13209146 - 13209185
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  13209146 tgtaacgccctctttgaattatttcattatttaattgagt 13209185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 40212540 - 40212579
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  40212540 tgtaacgccctccttgaattatttaattatttaattgagt 40212579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 1464283 - 1464326
Alignment:
Q  221 atgtgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||    
T  1464283 atgtgtaacgccctcttt-aattatttaattattttattgagttt 1464326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 3401772 - 3401816
Alignment:
Q  221 atgtgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  3401772 atgtgtaatgcccacttttaattaattaattatttaatcgagttt 3401816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 25468766 - 25468806
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  25468766 gtgtaacgcccgttttgaattatttaattatttaattgagt 25468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 22920693 - 22920732
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22920693 tgtaatgccctctttgaattatttaattatttaattgagt 22920732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 33682311 - 33682272
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  33682311 tgtaacgccctctttgaattatttaattatttaattgagt 33682272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 21747255 - 21747220
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21747255 tgtaacgccctctttgaattatttaattatttaatt 21747220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 21856697 - 21856730
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaa 257  Q
    ||||| ||||||||||||||||||||||||||||    
T  21856697 tgtaacgccctctttgaattatttaattatttaa 21856730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 16760010 - 16759970
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| |||||| |||||||||||||||||||| ||||||    
T  16760010 gtgtaacgccctccttgaattatttaattatttagttgagt 16759970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 46560581 - 46560549
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattattt 255  Q
    |||||| ||||||||||||||||||||||||||    
T  46560581 gtgtaacgccctctttgaattatttaattattt 46560549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 16218538 - 16218580
Alignment:
Q  221 atgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  16218538 atgtgtaacgccctctttgaattatttaattatttaattgagt 16218580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 12254614 - 12254651
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattga 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12254614 tgtaatgccctctttgaattatttaattatttaattga 12254651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 10590003 - 10589964
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10590003 tgtaacgccctctttgaattatttaattatttaattgagt 10589964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 18006937 - 18006898
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18006937 tgtaacgccctctttgaattatttaattatttaattgagt 18006898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 809966 - 810005
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  809966 tgtaacgctctctttgaattatttaattatttaattgagt 810005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 3563219 - 3563250
Alignment:
Q  232 cctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||    
T  3563219 cctctttgaattatttaattatttaattgagt 3563250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 15753713 - 15753752
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  15753713 tgtaacgccctttttgaattatttaattatttaattgagt 15753752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 16057627 - 16057588
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  16057627 tgtaacgccctctttgagttatttaattatttaattgagt 16057588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 44015478 - 44015443
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44015478 tgtaacgccctctttgaattatttaattatttaatt 44015443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 14195548 - 14195503
Alignment:
Q  220 catgtgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||||||| |||| |||| ||||| ||||||||||||||||||||    
T  14195548 catgtgtaacgcccacttttaattaattaattatttaattgagttt 14195503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 41526669 - 41526625
Alignment:
Q  222 tgtgtaatgccctctttgaattattt-aattatttaattgagttt 265  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||    
T  41526669 tgtgtaacgccctctttgaattatttgatttatttaattgagttt 41526625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 25645602 - 25645560
Alignment:
Q  221 atgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  25645602 atgtgtaacgccctctttgaattatttaattatttaattgagt 25645560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 22079370 - 22079409
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  22079370 tgtaacgccctctttgaattatttaattatttaattgagt 22079409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 27332145 - 27332184
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  27332145 tgtaacgccctctttgaattatttaattatttaattgagt 27332184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 27392885 - 27392924
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  27392885 tgtaacgccctctttgaattatttaattatttaattgagt 27392924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 23022636 - 23022603
Alignment:
Q  230 gccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||    
T  23022636 gccctctttgaattatttaattatttaattgagt 23022603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 1562598 - 1562559
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  1562598 tgtaacgccctttttgaattatttaattatttaattgagt 1562559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 20360290 - 20360329
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  20360290 tgtaacgctctctttgaattatttaattatttaattgagt 20360329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 20595054 - 20595015
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  20595054 tgtaacgccctttttgaattatttaattatttaattgagt 20595015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0876 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0876
Description:

Target: scaffold0876; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 1897 - 1938
Alignment:
Q  222 tgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1897 tgtgtaacgccctctttgaattatttaattatttaattgagt 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 8090 - 8049
Alignment:
Q  222 tgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  8090 tgtgtaacgccctctttgaattatttaattatttaattgagt 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 23287155 - 23287114
Alignment:
Q  222 tgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  23287155 tgtgtaacgccctctttgaattatttaattatttaattgagt 23287114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 23653226 - 23653265
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23653226 tgtaacgccctctttgaattatttaattatttaattgagt 23653265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 24078153 - 24078192
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  24078153 tgtaacgccctctttgaattatttaattatttaattgagt 24078192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 27783 - 27823
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27783 gtgtaacgccctctttgaattatttaattatttaattgagt 27823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 50356 - 50396
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  50356 gtgtaacgccctctttgaattatttaattatttaattgagt 50396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 16091162 - 16091202
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  16091162 gtgtaacgccctctttgaattatttaattatttaattgagt 16091202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 7464562 - 7464601
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  7464562 tgtaacgccctctttgaattatttaattatttaattgagt 7464601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 23759684 - 23759717
Alignment:
Q  230 gccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||    
T  23759684 gccctctttgaattatttaattatttaattgagt 23759717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 26354508 - 26354553
Alignment:
Q  218 gtcatgtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||    
T  26354508 gtcaagtgtaacgccctctttgaattatctaattatttaattgagt 26354553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 21287502 - 21287470
Alignment:
Q  231 ccctctttgaattatttaattatttaattgagt 263  Q
    |||||||||||||||||||||||||||||||||    
T  21287502 ccctctttgaattatttaattatttaattgagt 21287470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 21674964 - 21674924
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  21674964 gtgtaacgccctctctgaattatttaattatttaattgagt 21674924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 6521670 - 6521631
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  6521670 tgtaacgccttctttgaattatttaattatttaattgagt 6521631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 22876365 - 22876326
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  22876365 tgtaacgccctccttgaattatttaattatttaattgagt 22876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 20985346 - 20985387
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  20985346 tgtaacgccctctttgaattatttatttatttatttgagttt 20985387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 38854076 - 38854117
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagttt 265  Q
    ||||| || ||||||||||||||||||||||||| |||||||    
T  38854076 tgtaacgcactctttgaattatttaattatttaaatgagttt 38854117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1326 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1326
Description:

Target: scaffold1326; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 214 - 175
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  214 tgtaacgccctctttgaattatttaattatttaattgagt 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0894 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 875 - 836
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  875 tgtaacgccctctttgaattatttaattatttaattgagt 836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 4798 - 4837
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  4798 tgtaacgccctctttgaattatttaattatttaattgagt 4837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0621 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0621
Description:

Target: scaffold0621; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 7843 - 7804
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  7843 tgtaacgccctctttgaattatttaattatttaattgagt 7804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 7057 - 7096
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  7057 tgtaacgccctctttgaattatttaattatttaattgagt 7096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 13309 - 13270
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  13309 tgtaacgccctctttgaattatttaattatttaattgagt 13270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 8292 - 8331
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8292 tgtaacgccctctttgaattatttaattatttaattgagt 8331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 26040 - 26079
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  26040 tgtaatgccctctttgaattatttaattaattaattgagt 26079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 11447 - 11408
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  11447 tgtaacgccctctttgaattatttaattatttaattgagt 11408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 32313 - 32352
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  32313 tgtaaggccctctttgaattatttaattatttaattgagt 32352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 24882 - 24921
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  24882 tgtaacgccctccttgaattatttaattatttaattgagt 24921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 23323 - 23362
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23323 tgtaacgccctctttgaattatttaattatttaattgagt 23362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 11828 - 11789
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  11828 tgtaacgccctctttgaattatttaattatttaattgagt 11789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 100469 - 100430
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  100469 tgtaacgccctctttgaattatttaattatttaattgagt 100430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 3286 - 3248
Alignment:
Q  221 atgtgtaatgccctctttgaattatttaattatttaatt 259  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  3286 atgtgtaacgccctctttgaattatttaattatttaatt 3248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 14667 - 14705
Alignment:
Q  225 gtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  14667 gtaacgccctctttgaattatttaattatttaattgagt 14705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 1696 - 1733
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattga 261  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  1696 tgtaacgccctctttgaattatttaattatttaattga 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 5829 - 5796
Alignment:
Q  230 gccctctttgaattatttaattatttaattgagt 263  Q
    ||||||||||||||||||||||||||||||||||    
T  5829 gccctctttgaattatttaattatttaattgagt 5796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 8557 - 8517
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  8557 gtgtaacgccctctttgaattatttaattgtttaattgagt 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 71442 - 71402
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  71442 gtgtaacgccctctctgaattatttaattatttaattgagt 71402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 3214 - 3175
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  3214 tgtaacgccctcttttaattatttaattatttaattgagt 3175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 16550 - 16589
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  16550 tgtaacgcgctctttgaattatttaattatttaattgagt 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 705 - 666
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  705 tgtaacgccctcttggaattatttaattatttaattgagt 666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 9514 - 9479
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9514 tgtaacgccctctttgaattatttaattatttaatt 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 11705 - 11670
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11705 tgtaacgccctctttgaattatttaattatttaatt 11670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 5784 - 5745
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  5784 tgtaacgccttctttgaattatttaattatttaattgagt 5745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 13366 - 13327
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  13366 tgtaacgccttctttgaattatttaattatttaattgagt 13327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 23318 - 23279
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  23318 tgtaacgccttctttgaattatttaattatttaattgagt 23279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 1461 - 1496
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1461 tgtaacgccctctttgaattatttaattatttaatt 1496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 11460 - 11421
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  11460 tgtaacgccctctttgaaatatttaattatttaattgagt 11421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 16031 - 16070
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  16031 tgtaacgccctctttgaattatttaattattgaattgagt 16070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 228779 - 228740
Alignment:
Q  224 tgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  228779 tgtaacgccctcttcgaattatttaattatttaattgagt 228740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 9395 - 9425
Alignment:
Q  233 ctctttgaattatttaattatttaattgagt 263  Q
    |||||||||||||||||||||||||||||||    
T  9395 ctctttgaattatttaattatttaattgagt 9425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1800 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 320 - 283
Alignment:
Q  222 tgtgtaatgccctctttgaattatttaattatttaatt 259  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  320 tgtgtaacgccctctttgaattattcaattatttaatt 283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 7873 - 7841
Alignment:
Q  231 ccctctttgaattatttaattatttaattgagt 263  Q
    |||||||| ||||||||||||||||||||||||    
T  7873 ccctcttttaattatttaattatttaattgagt 7841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 5643 - 5683
Alignment:
Q  223 gtgtaatgccctctttgaattatttaattatttaattgagt 263  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  5643 gtgtaacgcccggtttgaattatttaattatttaattgagt 5683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University