View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_high_3 (Length: 449)
Name: NF7483_high_3
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 232 - 433
Target Start/End: Complemental strand, 41712978 - 41712777
Alignment:
| Q |
232 |
ctaagagggggatcaaattaacaacaacactaatcactaaactcaaattaacagatcttacaagaaacacagaactaaaactaaaactcaacatcaaatc |
331 |
Q |
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| T |
41712978 |
ctaagagggggatcaaattaacaataacactaatcactaaactcaaattaacagatcttacaagaaacaaataactaaaactaaaactcaacatcaaatc |
41712879 |
T |
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| Q |
332 |
tttatcaaaattaacgaaaattcagaagcagaaaattatcgttaccttgaaagctacatagctatcagtcttattagacaattgaagagaacacgagatc |
431 |
Q |
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| T |
41712878 |
tttatcaaaattaacgaaaattcagaagcagaaaattatcgttaccttgaaagctacatagctatcagtcttattagacaattgaagagaacacgagatc |
41712779 |
T |
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| Q |
432 |
tg |
433 |
Q |
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|| |
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| T |
41712778 |
tg |
41712777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 41713202 - 41713078
Alignment:
| Q |
10 |
agtgagaagaaacgatgcattcagaataatcgtatccgtacccataacatcgcaggtagatcttggcaagacaattccagtgttaggacgaacacaatac |
109 |
Q |
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| T |
41713202 |
agtgaaaagaaacgatgcattcagaataaccgtatccgtacccataacatcgcaggtagatcttggcaagacaattccagtgttaggacgaacacaatac |
41713103 |
T |
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| Q |
110 |
ttcctgggattggttgttttcacct |
134 |
Q |
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| T |
41713102 |
ttcctgggattggttgttttcacct |
41713078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 3720668 - 3720726
Alignment:
| Q |
375 |
accttgaaagctacatagctatcagtcttattagacaattgaagagaacacgagatctg |
433 |
Q |
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| T |
3720668 |
accttgaaagcaacatagctatctgtcttatttgataattgaagagaacacgagatctg |
3720726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 3720209 - 3720269
Alignment:
| Q |
74 |
ggcaagacaattccagtgttaggacgaacacaatacttcctgggattggttgttttcacct |
134 |
Q |
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||||| |||| ||||||||| |||||||| |||||||||||||||||||| ||||| |||| |
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| T |
3720209 |
ggcaaaacaactccagtgtttggacgaacgcaatacttcctgggattggtcgtttttacct |
3720269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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