View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_high_7 (Length: 383)
Name: NF7483_high_7
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 33510315 - 33510689
Alignment:
| Q |
10 |
cacacacgaacacttaattcatatacttt-aacttcttgggatcctctgattaaccttaatgttacaactccacagaaaaatgcgtctcactgaagtccc |
108 |
Q |
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| T |
33510315 |
cacacacgaacacttaattcatatacttttaacttcttgggatcctctgattaaccttaatgttacaactccacagaaaaatgcgtctcactaaagtccc |
33510414 |
T |
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| Q |
109 |
gtcagatatattggggttgcatcaactacggatccttgacttgagtcagaattcccttcaatcaattccagaggtaacnnnnnnngggggcgataaaaaa |
208 |
Q |
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| T |
33510415 |
gtcagatatattggggttgcatcaactacggatccttgacttgagtcagaattcccttcaatcaattccagaggtaactttttttgggggcgataaaaaa |
33510514 |
T |
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| Q |
209 |
catgattaggcttgcaaagttgtgataatatgctttaacttcattttaatttgacagtgggtataaccttaggtctagcaatttgtatctttgcctctta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33510515 |
catgattaggcttgcaaagttgtgataatatgctttaacttcattttaatttgacagtgggtataaccttaggtctagcaatttgtatctttgcctctta |
33510614 |
T |
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| Q |
309 |
aaattcaaatcttagcaaagcttatatcggcttaacagtaacttgagtccactaatctgtctcaagtcataatga |
383 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33510615 |
aaattcaaatcttagcaaagcttatattggcttaacagtaacttgagtccactaatttgtctcaagtcataatga |
33510689 |
T |
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