View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_low_11 (Length: 314)
Name: NF7483_low_11
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 39801843 - 39801575
Alignment:
| Q |
30 |
ttcacctcatcatacttttcggaatagaaaatagtcgataagttttccgaaatttattgatgtataagaaaggttaaagaatatgttttccggaattgta |
129 |
Q |
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| T |
39801843 |
ttcacctcatcatacttttcggaatagaaaatagtcgataagttttccgaaatttattgatgtacaagaaaggttaaagaatatgttttccggaattgta |
39801744 |
T |
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| Q |
130 |
gtcacagttaaaatagttgttattctcacatttctctccaagcttatcgctacttcattttctctgtcaaattcaatagatacccattttcactgaaact |
229 |
Q |
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| T |
39801743 |
gtcacagttaaaatagttgtcattctcacatttctctcaaagcttatcgctacttaattttctctgtcaaattcaatagatacccattttcactgaaact |
39801644 |
T |
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| Q |
230 |
cctcaaaatcatacacatacactacaagatccgtaaaacttttgataactagaatttgaaccataattt |
298 |
Q |
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| T |
39801643 |
cctcaaaatcatacacatacactacaaattccgtaaaacttttgataactagaatgtgaaccataattt |
39801575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 39810392 - 39810118
Alignment:
| Q |
29 |
tttcacctcatcatacttttcggaatagaaaatagtcgataagttttccgaaatttattgatgtataagaaaggttaaagaatatgtttt-ccggaattg |
127 |
Q |
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| T |
39810392 |
tttcacctcatcatgcttttcggaatagaaaatagtgaataagttttccgaaatatattgatgtaccagaagggttaaaggatatgtttttccggaattg |
39810293 |
T |
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| Q |
128 |
tagtcacagttaaaatagttgttattctcacatttctctccaagcttatcg----ctacttcattttctctgtcaaattcaatagatacccattttcact |
223 |
Q |
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| T |
39810292 |
tagtcgcagttaaaatagtggttgttctcacatatctctcaaagctcgttggttgctacttcattttctctgtcaaattcaatggatacccattttcact |
39810193 |
T |
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| Q |
224 |
gaaactcctcaaaatcatacacatacactacaagatccgtaaaacttttgataactagaatttgaaccataattt |
298 |
Q |
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| T |
39810192 |
gaaactcctcaagatcatacacatacactacaagatccataaaacttttgataagtagaatgtgaaccataattt |
39810118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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