View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_low_12 (Length: 312)
Name: NF7483_low_12
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 38041490 - 38041770
Alignment:
| Q |
14 |
atatttcatggttgattgaatttaaagcaataatagcaacaagttttcctatcccgaggacaaaatacttgttatgtttagagattgtctgaaacatgtg |
113 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041490 |
atatttcatggttgattgaatttaaaacaataatagcaaccagttttcctatcccaaggacaaaatacttgttatgtttagagattgtctgaaacatgtg |
38041589 |
T |
|
| Q |
114 |
aaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagctaaacccatcgaacac |
213 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041590 |
aaacaagtctctttcacaagcctaatccttagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagctaaacccatcgaacac |
38041689 |
T |
|
| Q |
214 |
ctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattcttacctc |
294 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041690 |
ctcattcaccatacaattggtttgcacagtctatatatactcatcattgggtttacaagcaacacaaatcattcttacctc |
38041770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 50907405 - 50907141
Alignment:
| Q |
7 |
tcgaagaatatttcatggttgattgaatttaaagcaataatagcaacaagttttcctatcccga-ggacaaaatacttgttatgtttagagattgtctga |
105 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||||||||||||||| |||| || ||||| | |||||||||||||||||||||| |||||||||||| |
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| T |
50907405 |
tcgaagtatatttcatggttggttgaatttcaagcaataatagcaaccagttgtcacatccccaaggacaaaatacttgttatgtttggagattgtctga |
50907306 |
T |
|
| Q |
106 |
aacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagctaaaccca |
205 |
Q |
| |
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|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
50907305 |
aacaggt---------ctgtttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattaatgagccatgtctccaactaaaccca |
50907215 |
T |
|
| Q |
206 |
tcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacaca |
279 |
Q |
| |
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| ||||| ||||||||||||||||||||||| | | ||||||||||| |||||||||||||| || ||||||| |
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| T |
50907214 |
ttgaacaactcattcaccatacaattggttttcgaagtctatatatacacatcattgggtttagaaacaacaca |
50907141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 38038167 - 38038375
Alignment:
| Q |
86 |
tatgtttagagattgtctgaaacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtg--ccatgtgatcattattga |
183 |
Q |
| |
|
|||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
38038167 |
tatgtttagatcttgtctgaaacatgtaaagaaggtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgttccatgtgatcattaatga |
38038266 |
T |
|
| Q |
184 |
accatgtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatc |
283 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||| ||||||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||||| |
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| T |
38038267 |
gccatgtctccaactaaacccattgaacagctccttcaccatacaatcggtttgcaaagtctatatatacccaccattgggtttagaagcaacacaaatc |
38038366 |
T |
|
| Q |
284 |
attcttacc |
292 |
Q |
| |
|
||||||||| |
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|
| T |
38038367 |
attcttacc |
38038375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 293
Target Start/End: Original strand, 38031906 - 38032114
Alignment:
| Q |
86 |
tatgtttagagattgtctgaaacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaac |
185 |
Q |
| |
|
|||||||||| ||||||||||||||| || | ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
38031906 |
tatgtttagatcttgtctgaaacatgtaaagaaggtctctttcacaaacctaatcctcagtgaaaacctccaagacagtggcatgtgatcattaatgaga |
38032005 |
T |
|
| Q |
186 |
catgtctccagctaaa-cccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatca |
284 |
Q |
| |
|
|||||| | | ||||| ||||| ||| | ||||||||||||||||||||||| | ||||||||||| | || |||| |||||||||||||||||| | |
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|
| T |
38032006 |
catgtccctaactaaaccccattgaataactcattcaccatacaattggtttcttaagtctatatatacccctctttggatttacaagcaacacaaataa |
38032105 |
T |
|
| Q |
285 |
ttcttacct |
293 |
Q |
| |
|
||||||||| |
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|
| T |
38032106 |
ttcttacct |
38032114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 38027082 - 38027285
Alignment:
| Q |
98 |
ttgtctgaaacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagc |
197 |
Q |
| |
|
||||||||||||||| || | ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||| | |
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|
| T |
38027082 |
ttgtctgaaacatgtaaagaaggtctctttcacaaacctaatccttagtgaaaacctccaagacagtgccatgtgatcattaataagacatgtctccaac |
38027181 |
T |
|
| Q |
198 |
taaac-ccatcgaacacctcattcaccatacaattggttt-------gcacaatctatatatactcatcattgggtttacaagcaacacaaatcattctt |
289 |
Q |
| |
|
||||| || ||| | |||||||||||||||||| |||| | | ||||||||||| | ||||||| ||| |||||||||||||| |||||| |
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| T |
38027182 |
taaactaaattgaataactcattcaccatacaattagtttcttaagagttaagtctatatatacccctcattggattttcaagcaacacaaataattctt |
38027281 |
T |
|
| Q |
290 |
acct |
293 |
Q |
| |
|
|||| |
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|
| T |
38027282 |
acct |
38027285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 55083183 - 55082999
Alignment:
| Q |
112 |
tgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagctaaa-cccatcgaa |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||| ||| |||||||| ||||| ||||| ||| |
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|
| T |
55083183 |
tgaaacatttctctttcacaagcctaatcctcagtgagaacctccaaaacaaagccatgtgatcattagtgagtaatgtctcctactaaaccccattgaa |
55083084 |
T |
|
| Q |
211 |
cacctcattcaccatacaattggtttgcacaatc--tatatatactcatcattgggtttacaagcaacacaaatcattcttacct |
293 |
Q |
| |
|
| ||||| ||||||||||||||||| || | || |||||||||||||||| | ||||| |||||||| ||||||||| ||||| |
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|
| T |
55083083 |
taactcatccaccatacaattggttttcaaagtctatatatatactcatcatcgagtttagaagcaacaaaaatcattcatacct |
55082999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 50912804 - 50912907
Alignment:
| Q |
101 |
tctgaaacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgccatgtgatcattattgaaccatgtctccagctaa |
200 |
Q |
| |
|
||||||| ||||||| || |||||| ||||||| |||||||| | ||||||||||||||||||||| |||||||||||| ||| | ||||||||| ||| |
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|
| T |
50912804 |
tctgaaagatgtgaagcaggtctctgtcacaagtctaatcctcaatgaaaacctccaagacagtgctatgtgatcattaatgagctatgtctccaattaa |
50912903 |
T |
|
| Q |
201 |
accc |
204 |
Q |
| |
|
|||| |
|
|
| T |
50912904 |
accc |
50912907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 50913276 - 50913324
Alignment:
| Q |
245 |
tatatatactcatcattgggtttacaagcaacacaaatcattcttacct |
293 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
50913276 |
tatatataaccatccttgagtttacaagcaacacaaatcattcttacct |
50913324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 86 - 294
Target Start/End: Original strand, 21607876 - 21608086
Alignment:
| Q |
86 |
tatgtttagagattgtctgaaacatgtgaaacaagtctctttcacaagcctaatcctaagtgaaaacctccaagacagtg--ccatgtgatcattattga |
183 |
Q |
| |
|
|||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
21607876 |
tatgtttagatcttgtctgaaacatgcaaagaaggtctctttcacaagcctaatcctaagtgaaaacctccaagacagtgtgccatgtgatcattaacga |
21607975 |
T |
|
| Q |
184 |
accatgtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatc |
283 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||| ||||||||||||| |||||| | | ||||||||||| || ||||||||||| |||||| ||||||| |
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|
| T |
21607976 |
gccatgtctccaactaaacccattgaacagctccttcaccatacaatcggtttgtaaagtctatatatacccaccattgggtttagaagcaaaacaaatc |
21608075 |
T |
|
| Q |
284 |
attcttacctc |
294 |
Q |
| |
|
||||||||||| |
|
|
| T |
21608076 |
attcttacctc |
21608086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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