View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_low_21 (Length: 244)
Name: NF7483_low_21
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_low_21 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7310239 - 7309996
Alignment:
| Q |
1 |
ctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaacttgaga |
100 |
Q |
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| T |
7310239 |
ctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaacttgaga |
7310140 |
T |
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| Q |
101 |
atggggaaaactctattatcaaattccatctttcccaagttaattacctcctttgtacagatctgattgttccaagtactacattttgtaacttgtgggc |
200 |
Q |
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| T |
7310139 |
aaggggaaaactttattatcaaattccatctttcccaagttaattacttcctttgttcagatctgattgttccaagcactacattttgtaacttgttggc |
7310040 |
T |
|
| Q |
201 |
aggctataatcttgagaataatgaaacacttcacatgatttact |
244 |
Q |
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| T |
7310039 |
aggctataatcttgagaataatgaaacacttcacatgatttact |
7309996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7329741 - 7329857
Alignment:
| Q |
1 |
ctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaacttgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | | || || |||||||||||| |
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| T |
7329741 |
ctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaacttgaga |
7329839 |
T |
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| Q |
101 |
atggggaaaactctatta |
118 |
Q |
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| T |
7329840 |
atgaggaaaactctatta |
7329857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
19 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
73 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
33 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
73 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
33 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
72 |
Q |
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| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 7329932 - 7329973
Alignment:
| Q |
203 |
gctataatcttgagaataatgaaacacttcacatgatttact |
244 |
Q |
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| T |
7329932 |
gctataaacttgagaatgatgaaacacttcacatcatttact |
7329973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
33 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
73 |
Q |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
33 |
agttctgatttagggtcatgttactaatgcatctgaa |
69 |
Q |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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