View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_low_22 (Length: 241)
Name: NF7483_low_22
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_low_22 |
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| [»] scaffold0237 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 43470210 - 43469997
Alignment:
| Q |
21 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgcgcacnnnnnnnn----tgaagacaaagctcctcccctatgaataaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
43470210 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgcacacaaaaaaaaaaaatgaagacaaagctcctcccctatgaacaaa |
43470111 |
T |
|
| Q |
117 |
aattgatgacggtaagcaagttttgnnnnnnnttgtcattcatataatgttttcctctctcatgaaaacacattgaattagcttttcagatctatctgct |
216 |
Q |
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|||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470110 |
aattgatgacggtaagcaagttgtgaaaaaaattgtcattcatataatattttcctctctcatgaaaacacattgaattagcttttcagatctatctgct |
43470011 |
T |
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| Q |
217 |
ccctttattttctt |
230 |
Q |
| |
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|||||||||||||| |
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| T |
43470010 |
ccctttattttctt |
43469997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 36220256 - 36220043
Alignment:
| Q |
21 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgcgcacnnnnnnnn---tgaagacaaagctcctcccctatgaataaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||| |||| |
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| T |
36220256 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacttgcacacaaaaaaaaaaatgaagacaaagctcatcccctatgaacaaaa |
36220157 |
T |
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| Q |
118 |
attgatgacggtaagcaagttttgnnnnnnn-ttgtcattcatataatgttttcctctctcatgaaaacacattgaattagcttttcagatctatctgct |
216 |
Q |
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| T |
36220156 |
attgatgacaataagcaagttgtgaaaaaaaattgtcattcatataatgttttcctctctcatgaaaacacgttgaattagcttttcatatctatctgct |
36220057 |
T |
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| Q |
217 |
ccctttattttctt |
230 |
Q |
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|||||||||||||| |
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| T |
36220056 |
ccctttattttctt |
36220043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 4019 - 3876
Alignment:
| Q |
87 |
tgaagacaaagctcctcccctatgaataaaaattgatgacggtaagcaagttttgnnnnnnnttgtcattcatataatgttttcctctctcatgaaaaca |
186 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||| |
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| T |
4019 |
tgaagacaaagctcctcccctatgaacaaaaactgatgacggtatgcaagttgtgaaaaaaattgtcattcatataatgttttcctctctcatgaataca |
3920 |
T |
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| Q |
187 |
cattgaattagcttttcagatctatctgctccctttattttctt |
230 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
3919 |
cattaaattagcttttcaaatctatctgctccctttattttctt |
3876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 4278 - 4225
Alignment:
| Q |
21 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgc |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4278 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgc |
4225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 29857817 - 29857674
Alignment:
| Q |
87 |
tgaagacaaagctcctcccctatgaataaaaattgatgacggtaagcaagttttgnnnnnnnttgtcattcatataatgttttcctctctcatgaaaaca |
186 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||| |
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| T |
29857817 |
tgaagacaaagctcctcccctatgaacaaaaactgatgacggtatgcaagttgtgaaaaaaattgtcattcatataatgttttcctctctcatgaataca |
29857718 |
T |
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| Q |
187 |
cattgaattagcttttcagatctatctgctccctttattttctt |
230 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
29857717 |
cattaaattagcttttcaaatctatctgctccctttattttctt |
29857674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 29858077 - 29858024
Alignment:
| Q |
21 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgc |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29858077 |
gatgaagtcaagaacaaagtttctttttatgttctaaattgtagttctacctgc |
29858024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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