View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7483_low_4 (Length: 426)
Name: NF7483_low_4
Description: NF7483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7483_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 202 - 404
Target Start/End: Complemental strand, 32809286 - 32809081
Alignment:
| Q |
202 |
acttcatctatcatttatctccctctcaccaatcttacaaatatatataccacaatgtgagagactcacatggtcaagttattttgcttcaacctttttt |
301 |
Q |
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| T |
32809286 |
acttcatctatcatttatctccctctcaccaatcttacaaatatatataccacaatgtgagagactcacatggtcaagttattttgcttcaacct-tttt |
32809188 |
T |
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| Q |
302 |
ctcaagtatggaggagcctcacgacaaggagaacac-aca----tggtgtgcaatgaccgtcaaggctgcaaggttgggcatgggtggaatcggtaaaca |
396 |
Q |
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| T |
32809187 |
ctcaagtatggaggagcctcacgacaaggagaccacaacaccgttggag-gcaaggtgtgcaaaggctgcaaccttgggcatgggtggaatcggtaaaca |
32809089 |
T |
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| Q |
397 |
ggtagtga |
404 |
Q |
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|||||||| |
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| T |
32809088 |
ggtagtga |
32809081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 32809485 - 32809348
Alignment:
| Q |
1 |
tgacattcaatgttattataacacaacccacccacttcacttatttattccacttcttacatctcaaacttgtaaactctcact------catttccagt |
94 |
Q |
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| T |
32809485 |
tgacattcaatgttatttaaacacaacccacccacttcacttatttattccacttcttacatctcaaact--taacctctcactcacttccacttccagt |
32809388 |
T |
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| Q |
95 |
tttctttcactcattcccttactcacaaacaaacccttaa |
134 |
Q |
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| T |
32809387 |
tttctttcactcattcccttactcacaaacaaaaccttaa |
32809348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 32269420 - 32269294
Alignment:
| Q |
1 |
tgacattcaatgttattataacacaacccacccacttcacttatttattccacttcttacatctcaaacttgtaaactctcactcatttccagttttctt |
100 |
Q |
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| T |
32269420 |
tgacattcaatgttatttaaacaaaacccataaatttcacttatatattccacttctttcatctcaaacttgtaaccttgcactcacttccaattttctt |
32269321 |
T |
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| Q |
101 |
tcactcattcccttactcacaaacaaa |
127 |
Q |
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| T |
32269320 |
tcactcattcccttactcacaaacaaa |
32269294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 32269165 - 32269026
Alignment:
| Q |
281 |
tattttgcttcaaccttttttctcaagtatggaggagcctcacgacaaggagaacaca-ca----tgg-------tgtgcaatgaccgtcaaggctgcaa |
368 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||| ||||| |
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| T |
32269165 |
tatttttcttaaaccttttttctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaagtgtgcaatgaccgtcaaggttgcaa |
32269066 |
T |
|
| Q |
369 |
ggttgggcatgggtggaatcggtaaacaggtagtgaatct |
408 |
Q |
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| T |
32269065 |
ccttgggcatgggtggaatcggtaaacaggtagtgaatct |
32269026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 32275452 - 32275334
Alignment:
| Q |
303 |
tcaagtatggaggagcctcacgacaaggagaacaca-------------catggtgtgcaatgaccgtcaaggctgcaaggttgggcatgggtggaatcg |
389 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaaggtgtgcaatgaccgtcaaggctgcaagcttgggcatgggtggaatcg |
32275353 |
T |
|
| Q |
390 |
gtaaacaggtagtgaatct |
408 |
Q |
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||||||||||||||||||| |
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| T |
32275352 |
gtaaacaggtagtgaatct |
32275334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 32269221 - 32269175
Alignment:
| Q |
202 |
acttcatctatcatttatctccctctcaccaatcttacaaatatata |
248 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
32269221 |
acttcatctatcatttatctccctctcaccagtcttacaaatttata |
32269175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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