View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7485_high_2 (Length: 246)
Name: NF7485_high_2
Description: NF7485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7485_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31228658 - 31228425
Alignment:
| Q |
1 |
ctccgcgagcgtgtagctgaaggtgaagcttgagctttaattcaatcaatggcatggatagaatcggcgggattgcaaaatgtgattttcgagatgaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
31228658 |
ctccgcgagcgtgtagctgaaggtgaagcttgaggtttaattcaagcaatggcatggatagaatcggtgggactgcaaaatgtgattttcgagatgaata |
31228559 |
T |
|
| Q |
101 |
gcaaacaagtcgtgcatgacg-tgacaaagaaattcacaacagtttggtatacggtttgatcctaggcaacaagcaaatagtagagttcacactctcaac |
199 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228558 |
gcaaacaggtcgtgcatgacgctgacaaagaaattcacaacagtttggtatacggtttgatcctaggcaacaagcaaatagtagagttcacactctcaac |
31228459 |
T |
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| Q |
200 |
acaagcttctctatct--tacgctcctcacacag |
231 |
Q |
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|||||||||||||||| || ||||||||||||| |
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| T |
31228458 |
acaagcttctctatcttatatgctcctcacacag |
31228425 |
T |
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