View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7485_low_1 (Length: 524)
Name: NF7485_low_1
Description: NF7485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7485_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 7250553 - 7251022
Alignment:
| Q |
16 |
aattctaattaatgtgaaaattattactaattactaatacaatactaataccatatcaactaaaataagactaatacaatagcaactaaaataaggctaa |
115 |
Q |
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| T |
7250553 |
aattctaattaatgtgaaaattattactaattactaatacaatactaataccatatcaactaaaataagactaatacaatagcaactaaaataaggctaa |
7250652 |
T |
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| Q |
116 |
tcaataggcattgattgtgaccatatatgagagacatcttttgacaacgaggagtgttatttgaattatagtaaaaacacaacacaatgttagtatgaga |
215 |
Q |
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| T |
7250653 |
tcaataggcattgattgtgaccatatatgagagacatcttttgacaacgaggagtgttatttgaattatagtaaaaacacaacacaatgttagtatgaaa |
7250752 |
T |
|
| Q |
216 |
tataaaattatcataannnnnnngatcaaatatcatttctctttgacaattgttattgttttttctattttctctcccacccaaatttattcttttgttc |
315 |
Q |
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| T |
7250753 |
gataaaattatcataatttttttgatcaaatatcatttctctttgacaattgttattgttttttctattttctctcccacccaaatttattcttttgttc |
7250852 |
T |
|
| Q |
316 |
cagaaaccgtactcaagtcttccgcacgattcatattcattcattggagtttattaactactcgagtctaattacttggttgactcaattttattctatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7250853 |
cagaaaccgtactcaagtcttccgcacgattcatattcattcattggagtttattaactactgaagtctaattacttggttgactcaattttattctatt |
7250952 |
T |
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| Q |
416 |
tatattctcactttgaaatttcagccactctaaatactagttaatgtgaaaaatgtgcctaatacaaata |
485 |
Q |
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| T |
7250953 |
tatattctcactttgaaatttcagccactctaaatactagttaatgtgaaaaatgtgcctaatacaaata |
7251022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 512
Target Start/End: Original strand, 7251318 - 7251346
Alignment:
| Q |
484 |
tagtaattataaggattccatttccatat |
512 |
Q |
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| T |
7251318 |
tagtaattataaggattccatttccatat |
7251346 |
T |
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