View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_high_8 (Length: 254)
Name: NF7486_high_8
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1875031 - 1874813
Alignment:
| Q |
1 |
ttgttttctacaaatgcatgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875031 |
ttgttttctacaaatgcatgcattttcgtcgatagaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacc |
1874932 |
T |
|
| Q |
101 |
tgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatggacaatatagtagagtcaataatttgattgtttctaccacgtggaaccctaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1874931 |
tgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatggacaatatagtagagtcaataatttgattgtttctaccacgtggaagcctaattg |
1874832 |
T |
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| Q |
201 |
gtccacatctctgttctga |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
1874831 |
gtccacatctctgttctga |
1874813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1884007 - 1883795
Alignment:
| Q |
1 |
ttgttttctacaaatgcatgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||| | |||||||||||||||||| | ||||||||||||||| |
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| T |
1884007 |
ttgttttctacaaat----gcattttcgtcgctagaaggaatactatccgtagagttattatttttgttgttctggtcatggacggttatgtcattcacc |
1883912 |
T |
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| Q |
101 |
tgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatggacaatatagtagagtcaataatttgattgtttctaccacgtggaaccctaattg |
200 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||| |||||||||||||||||||| |
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| T |
1883911 |
tgtgatttcgtcgcgttgtcgctatcaaacaacaatgaatcaatggacaacatag--gagtcaataattcgattctttccaccacgtggaaccctaattg |
1883814 |
T |
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| Q |
201 |
gtccacatctctgttctga |
219 |
Q |
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|| |||||||||||||||| |
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| T |
1883813 |
gttcacatctctgttctga |
1883795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 24840482 - 24840436
Alignment:
| Q |
163 |
aataatttgattgtttctaccacgtggaaccctaattggtccacatc |
209 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24840482 |
aatagtttgattgtttctaccaagtggaaccctaattggtccacatc |
24840436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 3417546 - 3417467
Alignment:
| Q |
18 |
atgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattc |
97 |
Q |
| |
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|||||||||||||| | |||||| |||| || |||||||||||| |||||||||||||||||||||| | |||||||||| |
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| T |
3417546 |
atgcattttcgtcgccagaaggaatactgtctgtagagctattattcttgttgttctggtcatgggcggctatgtcattc |
3417467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 28738219 - 28738175
Alignment:
| Q |
161 |
tcaataatttgattgtttctaccacgtggaaccctaattggtcca |
205 |
Q |
| |
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|||| ||||||||||||| |||||||||||| |||||||||||| |
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| T |
28738219 |
tcaaaaatttgattgtttacaccacgtggaactctaattggtcca |
28738175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 9868153 - 9868200
Alignment:
| Q |
159 |
agtcaataatttgattgtttctaccacgtggaaccctaattggtccac |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9868153 |
agtcaataattcgattgtttctaccacgtggaaccctaattggtccac |
9868200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 21848722 - 21848778
Alignment:
| Q |
161 |
tcaataatttgattgtttctaccacgtggaaccctaattggtccacatct-ctgttctga |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21848722 |
tcaataatttgattgtttctaccac---gaaccctaattggtccacatctcctgttctga |
21848778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 9198996 - 9199045
Alignment:
| Q |
163 |
aataatttgattgtttctaccacgtggaaccctaattggtccacatctct |
212 |
Q |
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||||||| |||||||| |||||||||||||||||| ||||||| ||||| |
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| T |
9198996 |
aataattcaattgtttccaccacgtggaaccctaatcggtccacctctct |
9199045 |
T |
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