View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7486_low_1 (Length: 482)

Name: NF7486_low_1
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7486_low_1
NF7486_low_1
[»] scaffold0026 (1 HSPs)
scaffold0026 (16-472)||(12437-12872)
[»] scaffold0634 (2 HSPs)
scaffold0634 (71-472)||(2747-3147)
scaffold0634 (51-87)||(3181-3217)
[»] chr2 (18 HSPs)
chr2 (19-472)||(26582856-26583313)
chr2 (134-472)||(23168954-23169294)
chr2 (134-472)||(23580211-23580551)
chr2 (16-164)||(5706610-5706759)
chr2 (13-361)||(23062869-23063216)
chr2 (13-169)||(23878325-23878481)
chr2 (35-197)||(25181446-25181606)
chr2 (66-173)||(29281368-29281475)
chr2 (35-164)||(9957-10086)
chr2 (71-246)||(23089604-23089779)
chr2 (51-263)||(26884489-26884701)
chr2 (71-246)||(23102032-23102207)
chr2 (103-246)||(24660876-24661019)
chr2 (71-173)||(21907750-21907852)
chr2 (13-75)||(23264551-23264613)
chr2 (103-173)||(27208324-27208394)
chr2 (103-173)||(27210659-27210729)
chr2 (133-361)||(23264301-23264524)
[»] chr6 (30 HSPs)
chr6 (19-472)||(29614738-29615195)
chr6 (16-211)||(12167637-12167832)
chr6 (16-211)||(19286546-19286741)
chr6 (18-211)||(19877730-19877923)
chr6 (16-211)||(19883506-19883701)
chr6 (16-211)||(19786455-19786650)
chr6 (16-164)||(34640575-34640724)
chr6 (16-164)||(34647249-34647398)
chr6 (16-173)||(25470290-25470448)
chr6 (18-151)||(21365067-21365200)
chr6 (18-151)||(23969049-23969182)
chr6 (71-387)||(25396343-25396658)
chr6 (71-241)||(18799754-18799924)
chr6 (35-164)||(20008493-20008622)
chr6 (71-246)||(21565761-21565936)
chr6 (46-238)||(19471891-19472082)
chr6 (355-471)||(19786751-19786866)
chr6 (112-263)||(19300359-19300509)
chr6 (355-471)||(12167420-12167535)
chr6 (355-471)||(19877513-19877628)
chr6 (355-471)||(19883289-19883404)
chr6 (355-471)||(19286329-19286444)
chr6 (16-75)||(24513370-24513429)
chr6 (51-189)||(29097221-29097359)
chr6 (112-189)||(9099694-9099770)
chr6 (112-251)||(11289294-11289433)
chr6 (71-126)||(24513414-24513469)
chr6 (51-88)||(31251879-31251916)
chr6 (133-196)||(9186841-9186903)
chr6 (113-173)||(31251793-31251853)
[»] chr3 (21 HSPs)
chr3 (19-471)||(41455687-41456142)
chr3 (13-468)||(18914193-18914646)
chr3 (19-163)||(24192274-24192418)
chr3 (52-173)||(14865216-14865338)
chr3 (71-173)||(16802037-16802139)
chr3 (73-173)||(55499698-55499798)
chr3 (77-264)||(13324376-13324562)
chr3 (346-403)||(18136117-18136174)
chr3 (13-129)||(17241085-17241201)
chr3 (17-251)||(10415123-10415359)
chr3 (17-251)||(10421793-10422029)
chr3 (35-128)||(17131147-17131240)
chr3 (133-264)||(13302844-13302974)
chr3 (133-264)||(13313520-13313650)
chr3 (17-86)||(10390034-10390104)
chr3 (71-128)||(12034015-12034072)
chr3 (350-403)||(18129607-18129660)
chr3 (51-189)||(19235629-19235767)
chr3 (412-468)||(18136249-18136306)
chr3 (294-398)||(9533232-9533335)
chr3 (413-468)||(18129736-18129792)
[»] chr7 (30 HSPs)
chr7 (19-472)||(13123506-13123967)
chr7 (19-336)||(13742860-13743174)
chr7 (19-472)||(12710435-12710896)
chr7 (16-211)||(13006706-13006901)
chr7 (16-162)||(12591230-12591377)
chr7 (18-151)||(3857953-3858087)
chr7 (13-361)||(13678649-13678995)
chr7 (35-151)||(2464758-2464874)
chr7 (13-246)||(16676623-16676845)
chr7 (13-246)||(17650859-17651081)
chr7 (41-340)||(46625166-46625464)
chr7 (35-173)||(16090457-16090595)
chr7 (35-147)||(20311597-20311709)
chr7 (355-472)||(13742686-13742803)
chr7 (35-161)||(29181654-29181780)
chr7 (71-173)||(11389918-11390020)
chr7 (81-196)||(11383440-11383554)
chr7 (51-173)||(14320192-14320315)
chr7 (35-128)||(2966383-2966476)
chr7 (355-471)||(13006489-13006604)
chr7 (35-128)||(20906993-20907086)
chr7 (307-398)||(18607248-18607339)
chr7 (294-398)||(147453-147556)
chr7 (39-86)||(13678982-13679030)
chr7 (344-398)||(16475929-16475983)
chr7 (25-75)||(21231532-21231582)
chr7 (50-86)||(13664450-13664487)
chr7 (112-145)||(46625551-46625584)
chr7 (359-403)||(13318007-13318051)
chr7 (71-147)||(21231567-21231643)
[»] chr4 (15 HSPs)
chr4 (16-472)||(8046420-8046893)
chr4 (16-164)||(53483022-53483171)
chr4 (35-173)||(16147376-16147514)
chr4 (35-252)||(11847397-11847614)
chr4 (41-194)||(15244566-15244719)
chr4 (71-163)||(14486052-14486144)
chr4 (13-147)||(15407485-15407608)
chr4 (45-246)||(15307415-15307620)
chr4 (41-244)||(13887086-13887289)
chr4 (41-244)||(13887943-13888146)
chr4 (346-403)||(14555881-14555938)
chr4 (201-264)||(14485975-14486037)
chr4 (46-246)||(8834185-8834385)
chr4 (114-197)||(27905613-27905695)
chr4 (294-395)||(18212523-18212623)
[»] scaffold0117 (1 HSPs)
scaffold0117 (19-472)||(9167-9628)
[»] chr8 (12 HSPs)
chr8 (19-472)||(23865615-23866078)
chr8 (16-126)||(17053949-17054060)
chr8 (35-197)||(24321216-24321376)
chr8 (355-472)||(19902808-19902924)
chr8 (13-147)||(14057148-14057271)
chr8 (71-361)||(18613409-18613695)
chr8 (13-147)||(25111385-25111508)
chr8 (346-401)||(19987990-19988045)
chr8 (103-246)||(21931018-21931161)
chr8 (347-397)||(20005423-20005473)
chr8 (419-468)||(20005563-20005612)
chr8 (380-471)||(17053780-17053870)
[»] scaffold1773 (2 HSPs)
scaffold1773 (19-340)||(324-644)
scaffold1773 (355-472)||(153-269)
[»] scaffold0029 (3 HSPs)
scaffold0029 (19-472)||(110939-111378)
scaffold0029 (35-169)||(91747-91881)
scaffold0029 (35-169)||(97473-97607)
[»] chr5 (23 HSPs)
chr5 (16-471)||(23527632-23528099)
chr5 (18-151)||(28889925-28890058)
chr5 (18-151)||(28896629-28896762)
chr5 (18-151)||(28909877-28910010)
chr5 (18-151)||(28931569-28931702)
chr5 (18-151)||(28946272-28946405)
chr5 (35-151)||(19236294-19236410)
chr5 (35-197)||(22460506-22460666)
chr5 (35-197)||(22467130-22467290)
chr5 (39-233)||(18408491-18408685)
chr5 (18-151)||(28933070-28933205)
chr5 (51-197)||(34829432-34829578)
chr5 (346-403)||(22232436-22232493)
chr5 (16-86)||(20819618-20819689)
chr5 (16-86)||(20826718-20826789)
chr5 (51-189)||(20781102-20781240)
chr5 (74-123)||(22439321-22439370)
chr5 (51-189)||(20772327-20772465)
chr5 (51-189)||(24930489-24930627)
chr5 (294-361)||(23112480-23112546)
chr5 (412-468)||(22232568-22232625)
chr5 (216-248)||(20819456-20819488)
chr5 (216-248)||(20826556-20826588)
[»] scaffold0456 (2 HSPs)
scaffold0456 (16-300)||(241-504)
scaffold0456 (16-300)||(7386-7649)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-163)||(14977-15121)
[»] chr1 (15 HSPs)
chr1 (18-211)||(41111214-41111407)
chr1 (35-197)||(21705625-21705785)
chr1 (35-197)||(21710167-21710328)
chr1 (35-164)||(20858305-20858434)
chr1 (35-197)||(20851678-20851838)
chr1 (50-263)||(19961472-19961684)
chr1 (41-246)||(22030298-22030504)
chr1 (71-196)||(18712098-18712223)
chr1 (346-403)||(20941657-20941714)
chr1 (355-471)||(41110997-41111112)
chr1 (133-361)||(11157328-11157554)
chr1 (294-398)||(20438224-20438327)
chr1 (413-468)||(23631145-23631200)
chr1 (412-468)||(20941789-20941846)
chr1 (113-145)||(20045382-20045414)
[»] scaffold0053 (2 HSPs)
scaffold0053 (40-359)||(81764-82082)
scaffold0053 (35-173)||(80036-80174)
[»] scaffold0154 (1 HSPs)
scaffold0154 (71-251)||(30194-30374)
[»] scaffold0249 (2 HSPs)
scaffold0249 (252-403)||(7517-7667)
scaffold0249 (412-468)||(7742-7798)
[»] scaffold0085 (1 HSPs)
scaffold0085 (35-197)||(4217-4377)
[»] scaffold0028 (2 HSPs)
scaffold0028 (73-386)||(65265-65577)
scaffold0028 (41-340)||(1274-1572)
[»] scaffold0247 (1 HSPs)
scaffold0247 (16-246)||(10610-10829)
[»] scaffold0924 (1 HSPs)
scaffold0924 (19-122)||(1343-1446)
[»] scaffold0317 (2 HSPs)
scaffold0317 (13-361)||(542-888)
scaffold0317 (39-86)||(875-923)
[»] scaffold0222 (1 HSPs)
scaffold0222 (13-233)||(16083-16303)
[»] scaffold0138 (1 HSPs)
scaffold0138 (41-246)||(1117-1322)
[»] scaffold0004 (3 HSPs)
scaffold0004 (103-361)||(116052-116308)
scaffold0004 (71-246)||(129217-129393)
scaffold0004 (13-75)||(116325-116388)
[»] scaffold0232 (1 HSPs)
scaffold0232 (41-246)||(18961-19166)
[»] scaffold0001 (3 HSPs)
scaffold0001 (51-263)||(493588-493800)
scaffold0001 (355-472)||(174440-174557)
scaffold0001 (103-246)||(525062-525204)
[»] scaffold0476 (1 HSPs)
scaffold0476 (52-173)||(3854-3975)
[»] scaffold0023 (1 HSPs)
scaffold0023 (35-128)||(134867-134960)
[»] scaffold0139 (1 HSPs)
scaffold0139 (12-361)||(15521-15856)
[»] scaffold0031 (2 HSPs)
scaffold0031 (41-246)||(121200-121406)
scaffold0031 (41-246)||(132077-132283)
[»] scaffold0090 (1 HSPs)
scaffold0090 (51-220)||(17492-17661)
[»] scaffold0461 (2 HSPs)
scaffold0461 (13-196)||(581-752)
scaffold0461 (112-196)||(7605-7688)
[»] scaffold0310 (1 HSPs)
scaffold0310 (71-147)||(6907-6983)
[»] scaffold1061 (1 HSPs)
scaffold1061 (131-340)||(1607-1815)
[»] scaffold0453 (1 HSPs)
scaffold0453 (51-263)||(11112-11324)
[»] scaffold0261 (2 HSPs)
scaffold0261 (51-263)||(24131-24342)
scaffold0261 (51-87)||(24070-24106)
[»] scaffold0094 (1 HSPs)
scaffold0094 (41-238)||(51552-51749)
[»] scaffold0077 (3 HSPs)
scaffold0077 (71-161)||(4191-4281)
scaffold0077 (351-403)||(17972-18024)
scaffold0077 (351-403)||(23605-23657)
[»] scaffold0348 (2 HSPs)
scaffold0348 (346-403)||(1527-1584)
scaffold0348 (412-468)||(1659-1716)
[»] scaffold0483 (1 HSPs)
scaffold0483 (50-263)||(11569-11782)
[»] scaffold0020 (1 HSPs)
scaffold0020 (71-361)||(102499-102787)
[»] scaffold0124 (2 HSPs)
scaffold0124 (71-173)||(34908-35010)
scaffold0124 (13-69)||(34861-34917)
[»] scaffold0034 (1 HSPs)
scaffold0034 (79-263)||(72565-72748)
[»] scaffold0720 (1 HSPs)
scaffold0720 (112-197)||(3882-3966)
[»] scaffold0235 (3 HSPs)
scaffold0235 (71-173)||(23226-23328)
scaffold0235 (71-196)||(15509-15633)
scaffold0235 (26-75)||(15475-15524)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-69)||(49595-49645)
[»] scaffold0337 (1 HSPs)
scaffold0337 (294-398)||(9950-10053)
[»] scaffold0107 (1 HSPs)
scaffold0107 (71-147)||(41160-41236)
[»] scaffold0206 (1 HSPs)
scaffold0206 (112-173)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (202-246)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (294-361)||(1207-1273)
[»] scaffold0335 (1 HSPs)
scaffold0335 (103-246)||(3230-3372)
[»] scaffold0106 (2 HSPs)
scaffold0106 (406-468)||(46685-46748)
scaffold0106 (406-468)||(50958-51021)


Alignment Details
Target: scaffold0026 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 12437 - 12872
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 215  Q
    |                    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  12537 g--------------------cttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaa 12616  T
Q  216 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 315  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  12617 tatttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgatt 12716  T
Q  316 gagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgga 415  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  12717 gagtaagaaatcaagtgaatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcgga 12815  T
Q  416 gtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacacaggtt 472  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12816 gtagtaagtcatatgagatatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 71 - 472
Target Start/End: Complemental strand, 3147 - 2747
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    ||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  3147 agcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 3048  T
Q  171 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 270  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3047 gaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaa 2948  T
Q  271 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcat 370  Q
    || ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  2947 gccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatgtatgcgcat 2849  T
Q  371 aattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacag 469  Q
    |||||||| ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||    
T  2848 aattataaataattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtagatatacacag 2750  T
Q  470 gtt 472  Q
    |||    
T  2749 gtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 3217 - 3181
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgag 87  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3217 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 3181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 26583313 - 26582856
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
    ||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  26583113 ttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgag 26583014  T
Q  319 tatgaaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 414  Q
    ||||||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |||    
T  26583013 tatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgcgg 26582915  T
Q  415 agtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    ||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582914 agtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 134 - 472
Target Start/End: Original strand, 23168954 - 23169294
Alignment:
Q  134 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 232  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  233 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 332  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  333 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 430  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T
Q  431 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23169252 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 134 - 472
Target Start/End: Original strand, 23580211 - 23580551
Alignment:
Q  134 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 232  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  233 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 332  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  333 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 430  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T
Q  431 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23580509 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcct 164  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 23063216 - 23062869
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  |||||  ||| ||||||   |||||  ||   ||||||||||    
T  23063216 gaacccgtaagcgaaaaatcatttgcattctgtcagaagttcgcttaagcgaaccgcaagcgaggcgttagcgagtgaaaccccaactctctgtaagccg 23063117  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattct 211  Q
    ||||||||||||||| | ||||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | | |||||||||      
T  23063116 gtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatccttttgagcattta 23063018  T
Q  212 aaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtgaatttttgaga 310  Q
    |||||||||| || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  |||||||| ||| ||||    
T  23063017 aaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtgaa-tttggaga 23062920  T
Q  311 tgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    ||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062919 tgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 23878481 - 23878325
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||||||||||||  |||| ||||||||||| ||  | ||||||||||||||| |  |||||||||||||||||| |||||||||| ||||||||||||    
T  23878481 gaacctgtgagcgaggaacctttttgattctgccaagaattcgctcaagcgaactgcaagcgaaccgtaagcgagcagaacccagacttactgtaagccg 23878382  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||    
T  23878381 gtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 25181446 - 25181606
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  25181446 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagtgaactgaacccagacctactgtaagctggtcgcttaagcaaactagccgt 25181545  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  25181546 cgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 29281475 - 29281368
Alignment:
Q  66 ccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctc 165  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  |||||||||||     
T  29281475 ccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctt 29281376  T
Q  166 tttttgaa 173  Q
    ||| ||||    
T  29281375 tttctgaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 10086 - 9957
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  10086 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 9987  T
Q  135 cgcttaagcgaagtgagccttagtcagcct 164  Q
    ||||||||| || ||||  |||| ||||||    
T  9986 cgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 23089604 - 23089779
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||   |||||||||||| ||||||    
T  23089604 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 23089703  T
Q  171 gaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089704 gaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 26884701 - 26884489
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    |||||||||||||||| |||||| |||||| |||||||  |||||   ||||  |||  || |||||||||||||| ||| || ||||||||||||| ||    
T  26884701 gttcgctcaagcgaactgtgagctaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 26884602  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtatagg 248  Q
    ||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| ||| | ||||||||| |||| |||||||||| ||||||||||    
T  26884601 agccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 26884503  T
Q  249 tatcagaatcctact 263  Q
     |||| |||||||||    
T  26884502 catca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 23102032 - 23102207
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||   |||||||||||||||||   |||||||||||| ||||||    
T  23102032 agcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 23102131  T
Q  171 gaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23102132 gaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 24661019 - 24660876
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 201  Q
    |||| |||||||||||||||||| | | ||||||||||||| |||   | ||||||||||| ||||||||| |||| |||||||||| |||||| | | |    
T  24661019 ctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaa-ttttacttcgtgcactaggggatccttt 24660921  T
Q  202 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660920 tgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 21907852 - 21907750
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| ||||||| ||||||  || | ||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |||||    
T  21907852 agcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttt 21907754  T
Q  170 tgaa 173  Q
    ||||    
T  21907753 tgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23264613 - 23264551
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 75  Q
    ||||| || ||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcga 23264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 27208324 - 27208394
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||| ||| |||||||||||||| ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208324 ctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 27210659 - 27210729
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||| ||| |||||||||||||| ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210659 ctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 361
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  133 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 230  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  231 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 330  Q
    |||||||| || ||||     |  |||||||| | ||||   |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatataca---ctaaatcctaccaaaacact-tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  331 tgaatatataatttattgaatgaaattgatg 361  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 29614738 - 29615195
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||   || |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
    ||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||    
T  29614935 ttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgag 29615034  T
Q  319 tatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 410  Q
    ||||||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   | ||    
T  29615035 tatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagtt 29615132  T
Q  411 tcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
     ||||| |||||||||||||||| ||||||  ||||  |||||||||||||||||||||||||    
T  29615133 gcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 19877923 - 19877730
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcg 116  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 19877824  T
Q  117 cttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877823 cttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 19786455 - 19786650
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||  ||||||||| ||||||||||||| |||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaagtgaacccagaacctactgtaagctggt 19786554  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  |||| ||||||||||||||||| ||||    
T  19786555 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgcatgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcct 164  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcct 164  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    |||||||| ||| |||||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    |||||||| ||| |||||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 387
Target Start/End: Complemental strand, 25396658 - 25396343
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||| ||||||| ||||||  ||   ||||||| ||||||||||||||| | | ||||||||||||||||||  | |||||||| || ||||||    
T  25396658 agcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccacttttt 25396559  T
Q  171 gaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaaca 269  Q
    ||||| | |||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||    
T  25396558 gaattat-gcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctactgaaaca 25396461  T
Q  270 agctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgca 369  Q
       |||| ||||||||||||||  |||||||||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |||||| ||  | |    
T  25396460 cattggtaatcgaattggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagta 25396361  T
Q  370 taattataattaattgtg 387  Q
    | ||||| ||||||||||    
T  25396360 tgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 18799924 - 18799754
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||    
T  18799924 agcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagccacttttt 18799825  T
Q  171 gaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 241  Q
    |||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799824 gaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 20008493 - 20008622
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  20008493 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20008592  T
Q  135 cgcttaagcgaagtgagccttagtcagcct 164  Q
     ||||||||||| ||||  |||| ||||||    
T  20008593 tgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 21565761 - 21565936
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||   |||||||||||| ||||||    
T  21565761 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 21565860  T
Q  171 gaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565861 gaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 19471891 - 19472082
Alignment:
Q  46 cagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcga 145  Q
    |||||||||||| ||||||||||  ||||| |||| ||||||| ||||||  || | |||| |||||||||||||||||| | | || ||||||||||||    
T  19471891 cagaagttcgcttaagcgaaccgcaagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcga 19471990  T
Q  146 agtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    ||   | ||| ||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19471991 agaaggtctt-gtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 355 - 471
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 19300359 - 19300509
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    |||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19300457  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 263  Q
    | || |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19300458 ttaagtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 24513370 - 24513429
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 75  Q
    ||||| ||||||||| |||||| |||||  |||||||||||||||||||||||| |||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcga 24513429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 29097359 - 29097221
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  29097359 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 29097260  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    ||  ||||||||||  ||| |||| |||||||||||||||    
T  29097259 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 29097221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 9099694 - 9099770
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    |||||||||||||| |||  ||||||||||||||| ||||  ||||||||||  ||| |||| |||||||||||||||    
T  9099694 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgcac 9099770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 11289294 - 11289433
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    |||||||||||| | ||| || ||||||||||||  |||||||||| ||||| |||| ||||  ||||| |||||||| |||||| | | || || | |     
T  11289294 ggtcgcttaagcaagctacccttcgcttaagcgagctgagccttagccagcccctttctgaa-ctttgcctcgtgcactaggggacccttttaagtaatt 11289392  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtat 251  Q
    | || ||||||||||| |||||||||| | |||||||||||    
T  11289393 ttaagtgtttcctttagcttgtataactcctgtataggtat 11289433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 24513414 - 24513469
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaa 126  Q
    |||||||||| ||||||| ||||||| || | |||| |||||||||||||||||||    
T  24513414 agcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaagcgaa 24513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 31251916 - 31251879
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagc 88  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  31251916 gttcgctcaagcgaactgtgagcgaaccgtgagcgagc 31251879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  133 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 196  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 31251853 - 31251793
Alignment:
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    ||||||||||||| ||| || ||||| ||||||| || |||||||||| ||| ||||||||    
T  31251853 gtcgcttaagcgagctacccttcgctcaagcgaactgggccttagtcaacctttttttgaa 31251793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 41455687 - 41456142
Alignment:
Q  19 gtgagcgaaaaacca--ttttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtc 115  Q
    |||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||    
T  41455687 gtgagcgaaaaaccaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtc 41455786  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 215  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||| | |||||| ||||| ||||||||||| ||||| ||||  ||    
T  41455787 gcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcatgaggggacttcctgagcgttctttaa 41455886  T
Q  216 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 315  Q
      |   ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||| ||| || ||||| |||    
T  41455887 cttcctctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattgattggtgttagtaaatgttggagataatt 41455986  T
Q  316 gagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 414  Q
    ||||| ||| || ||||||||||| ||  |||||||||||||||||||| | |||||||||||| |||||||| |||||||| |||||| | | || |||    
T  41455987 gagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttg-agttacgg 41456084  T
Q  415 agtagtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacacaggt 471  Q
    ||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||    
T  41456085 agtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 18914646 - 18914193
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| || ||  |||||| |||||||||||| ||| ||||||  |||||||| | ||||||| ||||||  ||   || |||||||    
T  18914646 gaacccgtaagcgaaaaatcaattccattctgccagaagttcgcttaagtgaaccgcaagcgaacctttagcgagcggaaccccaactctctataagccg 18914547  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    |||||||||||||||   || |||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||  |||||| | | ||||||||      
T  18914546 gtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactttt-gaatttttgcctcgtgcattaggggatccttttgagcatat 18914449  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgaga 310  Q
     | ||| |||| |  ||||||||||||| || ||||   | || |||||||||| ||||  ||  |||| ||||| ||||||||||||||||||| ||||    
T  18914448 aataatatttcttccaacttgtataacctttatatataca-cataatcctactaaaacactctattgatggaattagttgatgttagtgaattttggaga 18914350  T
Q  311 tgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 410  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||    
T  18914349 tgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttggaa-tt 18914251  T
Q  411 tcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 468  Q
     |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  18914250 gcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcc 163  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 14865338 - 14865216
Alignment:
Q  52 ttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccg-tcgcttaagcgaagtga 150  Q
    |||||| |||||| |||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||| |||    
T  14865338 ttcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactga 14865239  T
Q  151 gccttagtcagcctctttttgaa 173  Q
    |  ||||||||||| ||| ||||    
T  14865238 gtgttagtcagcctttttctgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 16802037 - 16802139
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||   ||||||| |||| ||||||    
T  16802037 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagccacttttt 16802136  T
Q  171 gaa 173  Q
    |||    
T  16802137 gaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 55499698 - 55499798
Alignment:
Q  73 cgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttga 172  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||  |||||||||||||||||    ||||||||||| ||||||||    
T  55499698 cgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgatcttagtcagccactttttga 55499797  T
Q  173 a 173  Q
    |    
T  55499798 a 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 13324376 - 13324562
Alignment:
Q  77 ccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 176  Q
    |||| |||||||  |||||| || | ||| ||||| ||||||||||||| | | || ||||||||||||  |||||||||||||||| |||| |||| ||    
T  13324376 ccgtcagcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-tt 13324474  T
Q  177 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 264  Q
    ||||||||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324475 ttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 17241085 - 17241201
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||  ||   || |||| ||    
T  17241085 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgcaagcgaaccgtcagcgagcggaaccccaactctctataagtcg 17241184  T
Q  113 gtcgcttaagcgaacta 129  Q
    |||||||||||||||||    
T  17241185 gtcgcttaagcgaacta 17241201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 10415123 - 10415359
Alignment:
Q  17 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcg-agctgaacccaga-cctactgtaagccgg 113  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||| | ||||||| |||   | |||| ||| ||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcgaacctgaacctagattttcctgt-agctgg 10415221  T
Q  114 tcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggg--acttcttgagca-ttc 210  Q
    |||||||||||| ||  || ||||||||||||| || | |||||| | ||| ||| |||| ||||||||||||||| |||||   ||| || || | |||    
T  10415222 tcgcttaagcgagctgcccttcgcttaagcgaactgggtcttagttaacct-tttctgaa-ttttgcttcgtgcactaggggttccttttttagtacttc 10415319  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtat 251  Q
    | || ||||| ||||| ||||||||||||||||||||||||    
T  10415320 t-aagtgttttctttagcttgtataacccttgtataggtat 10415359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 10421793 - 10422029
Alignment:
Q  17 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcg-agctgaacccaga-cctactgtaagccgg 113  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||| | ||||||| |||   | |||| ||| ||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcgaacctgaacctagattttcctgt-agctgg 10421891  T
Q  114 tcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggg--acttcttgagca-ttc 210  Q
    |||||||||||| ||  || ||||||||||||| || | |||||| | ||| ||| |||| ||||||||||||||| |||||   ||| || || | |||    
T  10421892 tcgcttaagcgagctgcccttcgcttaagcgaactgggtcttagttaacct-tttctgaa-ttttgcttcgtgcactaggggttccttttttagtacttc 10421989  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtat 251  Q
    | || ||||| ||||| ||||||||||||||||||||||||    
T  10421990 t-aagtgttttctttagcttgtataacccttgtataggtat 10422029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 17131240 - 17131147
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 128  Q
    |||||||||| ||  | |||||| |||||| || ||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  17131240 tttgattctgccaagaattcgcttaagcgagccatgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcacttaagcgaact 17131147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  133 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 231  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  232 tataacccttgtataggtatcagaatcctacta 264  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  133 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 231  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  232 tataacccttgtataggtatcagaatcctacta 264  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 10390034 - 10390104
Alignment:
Q  17 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 86  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10390104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 12034015 - 12034072
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 128  Q
    ||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  12034015 agcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  350 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 19235629 - 19235767
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  19235629 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 19235728  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    ||  ||||||||||  ||| |||| |||||||||||||||    
T  19235729 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 19235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  412 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 468  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 398
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 393  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  394 ctgga 398  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  413 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 468  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 13123506 - 13123967
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 13123704  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  13123705 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 13123804  T
Q  319 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 408  Q
    |||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || |    
T  13123805 tatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagt 13123903  T
Q  409 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13123904 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 13743174 - 13742860
Alignment:
Q  19 gtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  13743174 gtgagcgaaaaacaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactataagccggtcgc 13743075  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatg 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   || |||| ||||| |||||||| ||||||||||||||||||||||| |||     
T  13743074 ttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgaggggacttcttgagcattctataata 13742978  T
Q  218 tttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattga 317  Q
    |||| ||||||| |||||||||| || |||||| | |||||||| |||||| ||| |  ||| | |||  ||| ||||||| ||| || ||| ||||||     
T  13742977 tttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacgagccgaggattggattaattggtgttagt-aatgttggaggtgattgt 13742879  T
Q  318 gtatgaaatcaagtgaata 336  Q
    |||||||| ||||||||||    
T  13742878 gtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 12710435 - 12710896
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||  |||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacctgtaagcgaactgaacccagacctactgtaagttggtcgct 12710534  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  12710535 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 12710633  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
       |||||||| |||||||| | || ||||||  |||| |||| || ||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  12710634 cctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 12710733  T
Q  319 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 408  Q
    |||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || |    
T  12710734 tatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagt 12710832  T
Q  409 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  12710833 tat-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagc 162  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 3857953 - 3858087
Alignment:
Q  18 tgtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcg 116  Q
    |||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcg 3858052  T
Q  117 cttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||| ||| |||||||||||||||| ||||    
T  3858053 cttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 13678995 - 13678649
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  |||||| ||| ||||||   |||||  ||   ||||||||||    
T  13678995 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 13678896  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    ||||||||||||||| | ||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | | |||||||||     
T  13678895 gtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatccttttgagcatta 13678798  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgaga 310  Q
     |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||  |||    
T  13678797 aaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtgaa-tttgaaga 13678700  T
Q  311 tgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    ||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678699 tgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 2464874 - 2464758
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  2464874 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 2464775  T
Q  135 cgcttaagcgaagtgag 151  Q
    |||||||||||| ||||    
T  2464774 cgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 16676845 - 16676623
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| |||||||||| ||||||||||||    
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 16676757  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattct 211  Q
    |||||||||||||||||  |||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||      
T  16676756 gtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattga 16676658  T
Q  212 aaaatgtttcctttaacttgtataacccttgtata 246  Q
    || ||| |||||| |||||||||||||||| ||||    
T  16676657 aacatggttccttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 17651081 - 17650859
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| |||||||||| ||||||||||||    
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 17650993  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattct 211  Q
    |||||||||||||||||  |||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||      
T  17650992 gtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattga 17650894  T
Q  212 aaaatgtttcctttaacttgtataacccttgtata 246  Q
    || ||| |||||| |||||||||||||||| ||||    
T  17650893 aacatggttccttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 340
Target Start/End: Complemental strand, 46625464 - 46625166
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    |||| |||||||||||| |||||||||| |||| |||| | ||||||| |||| |  ||   |||||||| |||||||||||||| | | ||||||||||    
T  46625464 tctgccagaagttcgcttaagcgaaccgcgagcaaaccattagcgagcagaacgccaactctctgtaagcaggtcgcttaagcgagccagccgtcgctta 46625365  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccc 239  Q
    ||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||| ||||    
T  46625364 agcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtatgaccc 46625266  T
Q  240 ttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatat 339  Q
    | ||||| | | |  |||||||||  ||||   |||| || |||||||||||   |||||||||||  | |||||||||||||||| ||| |||||||||    
T  46625265 tggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtgaattttgaatatgattgagtatgaaaccaaatgaatatat 46625167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 16090595 - 16090457
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||| | |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  16090595 tttgattctgccaagaattcgcttaagcaagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16090496  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||||||||||| ||||  ||||||||||| ||| ||||    
T  16090495 cgcttaagcgaactgagtgttagtcagcctttttctgaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 20311597 - 20311709
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| ||||||||||  |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||| ||||    
T  20311597 tttgattctgccaagaattcgcttaagcgaaccgcaagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgt 20311696  T
Q  135 cgcttaagcgaag 147  Q
    |||||||||||||    
T  20311697 cgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  454 atgtagatatacacaggtt 472  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 29181654 - 29181780
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  |||||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  29181654 tttgattctgccaagagttcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 29181753  T
Q  135 cgcttaagcgaagtgagccttagtcag 161  Q
    ||||||||| || ||||  ||||||||    
T  29181754 cgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 11389918 - 11390020
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||    
T  11389918 agcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttt 11390016  T
Q  170 tgaa 173  Q
    ||||    
T  11390017 tgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  81 aagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 179  Q
    |||||||| |||||||||| |||||| |||| ||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  180 cttcgtgcacgagggga 196  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 14320192 - 14320315
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||||||||||||||||||||||| || |||||||  | |||   || | |||| |||||||||||||||||| ||| || ||||||||||||| ||    
T  14320192 gttcgctcaagcgaaccgtgagcgaactgtgagcgagcgaggacctcaactttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactg 14320291  T
Q  150 agccttagtcagcctctttttgaa 173  Q
    ||||||||||||||| ||| ||||    
T  14320292 agccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 2966476 - 2966383
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 128  Q
    |||||||||| ||  | |||||| |||||| |||||| ||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  2966476 tttgattctgccaagaattcgcttaagcgagccgtgaacgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 20906993 - 20907086
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 128  Q
    |||||||||| ||  | |||||| |||||| |||||| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20906993 tttgattctgccaagaattcgcttaagcgagccgtgaacgaaacataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  307 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 398  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 398
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 393  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  394 ctgga 398  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 13679030 - 13678982
Alignment:
Q  39 attctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 86  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  13679030 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 13678982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  344 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 398  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 21231532 - 21231582
Alignment:
Q  25 gaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 75  Q
    |||||| |||||| |||||  |||||||||||||||||||||||| |||||    
T  21231532 gaaaaatcattttcattctaccagaagttcgctcaagcgaaccgtcagcga 21231582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 13664487 - 13664450
Alignment:
Q  50 agttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 86  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13664487 agttcgctcaagcgaaccgtgagcgaacccgtaagcga 13664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 46625584 - 46625551
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcga 145  Q
    |||||||||||||||||| |||||||||||||||    
T  46625584 ggtcgcttaagcgaactacccgtcgcttaagcga 46625551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  359 atgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 21231567 - 21231643
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    |||||||||| ||||||| ||||||  || | |||| ||| |||||||||||| ||||   ||||||||||||||||    
T  21231567 agcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 8046420 - 8046893
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 115  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 215  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataa 8046619  T
Q  216 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 315  Q
      |   |||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||    
T  8046620 cttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgatt 8046719  T
Q  316 gagtatgaaatcaagtgaatatata-attta-----------------ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 397  Q
    | |||||||| |||||||||||||| || ||                 | |||||  |||||||| ||||||||||||||| |||||||||||| | |||    
T  8046720 gtgtatgaaaacaagtgaatatatatatatatatatatatataacatgtggaatgtgattgatgtgtgtgcataattataaataattgtgtatgatttgg 8046819  T
Q  398 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    |||  | || || | ||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  8046820 attact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggt 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcct 164  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 16147376 - 16147514
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  16147376 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16147475  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||||||||||| ||||  ||||||||||| ||| ||||    
T  16147476 cgcttaagcgaactgagtgttagtcagcctttttctgaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 11847614 - 11847397
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccg 133  Q
    |||||||||| ||  | |||||| ||||||||||||||||| ||||||||||||| ||| ||| || | ||||| |  |||||||||||||||||| |||    
T  11847614 tttgattctgccaagaattcgcttaagcgaaccgtgagcgacccgtaagcgagctagaatccaaacttcctgta-gttggtcgcttaagcgaactacccg 11847516  T
Q  134 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 232  Q
    ||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||   || |||||| | || |||||    
T  11847515 tcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtatttgtaagtgtttcttctagcttgt 11847417  T
Q  233 ataacccttgtataggtatc 252  Q
    ||||| ||||||||||||||    
T  11847416 ataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 15244719 - 15244566
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    ||||||||||||||||| ||||||||||||||||| || | ||||||| |||| |  ||   |||||||||||||||||||||||   ||||||||||||    
T  15244719 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagccggtcgcttaagcgagtcaaccgtcgctta 15244620  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 194  Q
    | |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244619 atcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 14486144 - 14486052
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcc 163  Q
    |||||||||| ||||||| ||||||| ||   ||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||    
T  14486144 agcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||           |||| ||||||| ||||| |||| | |||| |||||    
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaa-----------ccgtcagcgagcggaacctagactttctgtgagccg 15407520  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    ||||||||||||||||  |||||||||||||||||    
T  15407519 gtcgcttaagcgaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 15307620 - 15307415
Alignment:
Q  45 tcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcg 144  Q
    ||||||||||||| ||||||||||||||||| || | ||||||| |||| |  ||   ||||||| ||||||||||||||| | | || |||||||||||    
T  15307620 tcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagtcggtcgcttaagcgagccagccatcgcttaagcg 15307521  T
Q  145 aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttccttt---aacttgtataaccct 240  Q
    |||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | | | ||||||| ||||||||||  |||   ||||||||||||| |    
T  15307520 aagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctttcgagcattttaaaatgttttttttttcaacttgtataacctt 15307421  T
Q  241 tgtata 246  Q
    ||||||    
T  15307420 tgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 13887289 - 13887086
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    ||||||||||||| ||| |||||||||||| ||||||| | ||||||| |||| |  ||   |||||||||||||| |||||||| | | ||||||||||    
T  13887289 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13887190  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacc 238  Q
    |||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | | |||| |||| | |||||||||| || |||||||||||||    
T  13887189 agcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacc 13887092  T
Q  239 cttgta 244  Q
     |||||    
T  13887091 tttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 13888146 - 13887943
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    ||||||||||||| ||| |||||||||||| ||||||| | ||||||| |||| |  ||   |||||||||||||| |||||||| | | ||||||||||    
T  13888146 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13888047  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacc 238  Q
    |||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | | |||| |||| | |||||||||| || |||||||||||||    
T  13888046 agcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacc 13887949  T
Q  239 cttgta 244  Q
     |||||    
T  13887948 tttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  201 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 264  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 8834385 - 8834185
Alignment:
Q  46 cagaagttcgctcaagcgaaccgtgagcgaaccg-taagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcg 144  Q
    |||||||| |||  |||||||||||||||||||  | ||||||| |||| |  ||   ||||||||||||||||||| | | | | || |||||||||||    
T  8834385 cagaagtttgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggtcgcttaa-caagccagccttcgcttaagcg 8834287  T
Q  145 aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 243  Q
    |||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || ||||||||||||| ||||    
T  8834286 aagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgtataacctttgt 8834188  T
Q  244 ata 246  Q
    |||    
T  8834187 ata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 27905695 - 27905613
Alignment:
Q  114 tcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||| || ||||||||||||  ||||||| |||||||| |||| |||||||||||||||||||  |||||||    
T  27905695 tcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 393  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  394 ct 395  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 9167 - 9628
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||  ||  |    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaactt 9365  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   ||||| ||| || | | |||||| |    
T  9366 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcattagtaaatgttggtgttgattgtg 9465  T
Q  319 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 408  Q
    |||||||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||| | || |    
T  9466 tatgaaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataattgtatatgttctggattg-tcgagt 9564  T
Q  409 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9565 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 23866078 - 23865615
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 23865979  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  23865978 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 23865879  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || |   |||||| |    
T  23865878 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtattgattgtg 23865779  T
Q  319 tatgaaatcaagtgaata----------tataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 408  Q
    |||| ||  |||||||||          |||||  |   |||||  |||||||||||||||||||||||| ||||||||||||||||| ||||||   |     
T  23865778 tatgtaaataagtgaatacgtgtatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattgtt--gag 23865681  T
Q  409 tttcggagtagtaagtc-atatgaaatatatg-tgtagttaagttgtatgtagatatacacaggtt 472  Q
    || |||||||||||||| ||||||||||||||   ||||| |||||||||||||||||||||||||    
T  23865680 ttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtatgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 17054060 - 17053949
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 17053961  T
Q  115 cgcttaagcgaa 126  Q
    ||||||||||||    
T  17053960 cgcttaagcgaa 17053949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 24321216 - 24321376
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  24321216 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 24321315  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |||||||    
T  24321316 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  454 atgtagatatacacaggtt 472  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||           || |||||||||| | |||| |||||    
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcga-----------gcggaacccagactttctgtgagccg 14057236  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    ||||||||||||| ||| |||||||||||||||||    
T  14057237 gtcgcttaagcgagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 361
Target Start/End: Complemental strand, 18613695 - 18613409
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| ||||||| ||||||  ||   |||||||| |||||||||||||||| | ||||||||||||||||| ||| |||||||| ||| | |||    
T  18613695 agcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-ttt 18613598  T
Q  170 tgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaac 268  Q
    ||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || ||||||||||||| || ||||   | | |||||||||| |||     
T  18613597 tgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-gaaa 18613501  T
Q  269 aagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
     |  |||| |||||||| |||||  |||||||| ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613500 cacttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||           |||| ||||||| |||||||||| | |||| || ||    
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaa-----------ccgtcagcgagcggaacccagactttctgtgagtcg 25111420  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    ||||||||||||||||  |||||||||||||||||    
T  25111419 gtcgcttaagcgaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 401  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 21931161 - 21931018
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 199  Q
    ||||||| |||||||||||| |||| | || ||||||||||||||   ||||| | |||||| ||||||||  ||||||||| | ||| |||| |  | |    
T  21931161 ctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--ttttgcttcctccactagggaatccat 21931064  T
Q  200 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    || ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931063 ct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  347 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 397  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  419 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 468  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 471
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  380 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 471  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 644 - 324
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  644 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 545  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  544 taagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 446  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
       |||||||| |||||||| | || |||||| | |||||||| ||||||||||  ||||| | |||| ||| ||||||| ||| || |||||||| | |    
T  445 cctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagccagtgattggattgattggtgttagtaaatgttggagatgatggtg 346  T
Q  319 tatgaaatcaagtgaatatata 340  Q
    ||||||| ||||||||||||||    
T  345 tatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  454 atgtagatatacacaggtt 472  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 111378 - 110939
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||  ||||||     
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccatacctactgtaagttggtcgc- 111280  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 218  Q
                       |||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| |    
T  111279 -------------------ttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataattt 111200  T
Q  219 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 318  Q
     |||||||||| |||||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |    
T  111199 ctcctttaactagtataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtg 111100  T
Q  319 tatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 410  Q
    ||||||| |||||||        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||| | || ||     
T  111099 tatgaaaacaagtgaatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattg-tcgagttg 111001  T
Q  411 tcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 472  Q
    | ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  111000 t-ggagtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 91747 - 91881
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  91747 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 91846  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttt 169  Q
    |||||||||||| ||||  ||||| ||||| ||||    
T  91847 cgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 97473 - 97607
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  97473 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 97572  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttt 169  Q
    |||||||||||| ||||  ||||| ||||| ||||    
T  97573 cgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 23528099 - 23527632
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggt 114  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  115 cgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaa 214  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||  |    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttcttta 23527901  T
Q  215 atgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatga 313  Q
    |  |   |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || ||||||     
T  23527900 acttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgt 23527801  T
Q  314 ttgagtatgaaatcaagtga------------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 401  Q
    ||| || ||||| |||||||            ||||||||  | | |||||  |||||||||||||||||||||||| |||||||||  | ||||||||     
T  23527800 ttgggtgtgaaagcaagtgaatatgtatgtatatatataacatgtggaatgtgattgatgtatgtgcataattataaataattgtgtcag-tctggatta 23527702  T
Q  402 ttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 471  Q
    || || || | ||||||||||||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  23527701 tttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28889925 - 28890058
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  28889925 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28890024  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||  || |||||||||||||||| ||||    
T  28890025 ttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28896629 - 28896762
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  28896629 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28896728  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||  || |||||||||||||||| ||||    
T  28896729 ttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28909877 - 28910010
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  28909877 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28909976  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||  || |||||||||||||||| ||||    
T  28909977 ttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28931569 - 28931702
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  28931569 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28931668  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||  || |||||||||||||||| ||||    
T  28931669 ttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28946272 - 28946405
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgc 117  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  ||||||    
T  28946272 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28946371  T
Q  118 ttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    ||||||||  || |||||||||||||||| ||||    
T  28946372 ttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 19236410 - 19236294
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  19236410 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 19236311  T
Q  135 cgcttaagcgaagtgag 151  Q
    |||||||||||| ||||    
T  19236310 cgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 22460666 - 22460506
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| ||||||| || || |||||||  |||||||||||||||||||||| |||||||||||||||||| ||||    
T  22460666 tttgattctgccaagaattcgcttaagcgagccgtgagtgacccataagcgaattgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 22460567  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |||||||    
T  22460566 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 22467290 - 22467130
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  22467290 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgt 22467191  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||| | ||||  |||| |||||| ||| |||| | ||||||||| ||| |||||||    
T  22467190 cgcttaagcgtactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 18408491 - 18408685
Alignment:
Q  39 attctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgct 138  Q
    |||||| |||||||||||| ||||||  ||  |||||||||| ||||||| ||||||  || | ||||||||||||||||||||| ||||| ||||||||    
T  18408491 attctgccagaagttcgcttaagcgagtcgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgct 18408590  T
Q  139 taagcg-aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 233  Q
    |||||| || ||| |||||||||||| |||||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408591 taagcgaaaatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 28933070 - 28933205
Alignment:
Q  18 tgtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaaccc-agacctactgtaagccggtc 115  Q
    |||||||||||||||||||| | |||||||  ||||||||  |||||| |||||||||| |||||||||| |||||||| ||||||||||||||  ||||    
T  28933070 tgtgagcgaaaaaccatttttgtttctgtccaaagttcgccaaagcgagccgtgagcgacccgtaagcgaactgaaccccagacctactgtaagttggtc 28933169  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    | ||||||||  || |||| ||||||||||| ||||    
T  28933170 gtttaagcgagatagccgtggcttaagcgaactgag 28933205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 34829578 - 34829432
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    |||||||||||||||| | ||||||||||| || ||||  ||||||  ||||  ||| ||| |||||||||||||| ||| || ||||||||||||| ||    
T  34829578 gttcgctcaagcgaactgcgagcgaaccgtgagtgagcgagaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactg 34829479  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    ||||||||||| ||| ||| ||||  |||||||||||||| |||||||    
T  34829478 agccttagtcaacctttttctgaa-ctttgcttcgtgcactaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 20819689 - 20819618
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 86  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20819618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 20826789 - 20826718
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 86  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 20781240 - 20781102
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| ||| |||||||||||||||| |     
T  20781240 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaacta 20781141  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781140 agtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 22439321 - 22439370
Alignment:
Q  74 gaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagc 123  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  22439321 gaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaagc 22439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 20772465 - 20772327
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| ||| |||||||||||||||| ||    
T  20772465 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactg 20772366  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    ||  ||||||||||  ||| ||||  ||||||||||||||    
T  20772365 agtgttagtcagcccttttctgaa-atttgcttcgtgcac 20772327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 24930489 - 24930627
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  24930489 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 24930588  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcac 189  Q
    ||  ||||||||||  ||| |||| |||||||||||||||    
T  24930589 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 24930627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  412 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 468  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  216 tgtttcctttaacttgtataacccttgtatagg 248  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  216 tgtttcctttaacttgtataacccttgtatagg 248  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 504 - 241
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | |||||| ||||||||| |||||||||| | ||||||||| |||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 405  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 215  Q
    ||                    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||    
T  404 gc--------------------ttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaa 326  T
Q  216 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 300  Q
    | |||| || ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  325 tatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 7649 - 7386
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | |||||| ||||||||| |||||||||| | ||||||||| |||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 7550  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 215  Q
    ||                    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||    
T  7549 gc--------------------ttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaa 7471  T
Q  216 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 300  Q
    | |||| || ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7470 tatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  119 taagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcc 163  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 41111407 - 41111214
Alignment:
Q  18 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcg 116  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 41111308  T
Q  117 cttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 211  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111307 cttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 21705785 - 21705625
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  21705785 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21705686  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |||||||    
T  21705685 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 21710328 - 21710167
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  21710328 tttgattctgccaagaattcgcttaagcgagccgtgagcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21710229  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  |||| |||||| |||  ||| | ||||||||| ||| |||||||    
T  21710228 cgcttaagcgaactgagtgttagacagcctttttccgaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 20858305 - 20858434
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  20858305 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20858404  T
Q  135 cgcttaagcgaagtgagccttagtcagcct 164  Q
    |||||||||||| ||||  |||| ||||||    
T  20858405 cgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 20851678 - 20851838
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  20851678 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20851777  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |||||||    
T  20851778 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 263
Target Start/End: Complemental strand, 19961684 - 19961472
Alignment:
Q  50 agttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagt 148  Q
    ||||||||| |||||||||  |||||||||| |||||||  ||| ||| || | ||||| || |||||||||||||| ||| || ||||||||||||  |    
T  19961684 agttcgctcgagcgaaccgcaagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagat 19961586  T
Q  149 gagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtatag 247  Q
    |||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | |  |||||| |||| ||||||||||||||||||||    
T  19961585 gagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttacgtgtttcttttagcttgtataacccttgtatag 19961487  T
Q  248 gtatcagaatcctact 263  Q
    | |||| |||||||||    
T  19961486 gcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 22030298 - 22030504
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctt 139  Q
    |||| ||||||||||||  ||||||||||||||||| || | ||||||| |||| |  ||   ||||||||| ||||||||||||| | | || ||||||    
T  22030298 tctgccagaagttcgcttgagcgaaccgtgagcgaaacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgctt 22030397  T
Q  140 aagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    ||||||||   | ||||||||||| |||||| |||||||||||| ||||| |||  | | | |||||||||||| |||||||| || |||||||||||||    
T  22030398 aagcgaagaaggtcttagtcagccacttttt-aatttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacc 22030496  T
Q  239 cttgtata 246  Q
     |||||||    
T  22030497 tttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 18712223 - 18712098
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||| ||||| ||||||| ||||||  || | |||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||    
T  18712223 agcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttt 18712125  T
Q  170 tgaatttttgcttcgtgcacgagggga 196  Q
    |||| |||||| |||||||| ||||||    
T  18712124 tgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  454 atgtagatatacacaggt 471  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 361
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  133 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 230  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  231 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 330  Q
    ||||||||||| ||||   | |  |||||||||  ||||   |||| |||||||| || ||  |||||||| |||  |||||||||||||||||| ||||    
T  11157456 gtataacccttatatataca-ctaaatcctactgaaacactttggtaatcgaattagtcgagtttagtgaa-tttgaagatgattgagtatgaaaccaag 11157359  T
Q  331 tgaatatataatttattgaatgaaattgatg 361  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 393  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  394 ctgga 398  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  413 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 468  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  412 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 468  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 20045382 - 20045414
Alignment:
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcga 145  Q
    ||||||||||||||||| |||||||||||||||    
T  20045382 gtcgcttaagcgaactacccgtcgcttaagcga 20045414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 81764 - 82082
Alignment:
Q  40 ttctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctt 139  Q
    ||||| |||||||||||| ||||||||||| ||||||| || |||||||  ||||   ||   ||||||| ||||||||||||||| | | |||||||||    
T  81764 ttctgccagaagttcgcttaagcgaaccgtaagcgaactgttagcgagcgaaacctcaactctctgtaagtcggtcgcttaagcgagccagccgtcgctt 81863  T
Q  140 aagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    |||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | | ||||||||| ||||||||||| || |||||||||||||    
T  81864 aagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 81962  T
Q  239 cttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatata 338  Q
    |||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||||||| || ||| |||||||||||| ||||||||||||    
T  81963 cttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtgaattttggatatgtttgagtatgaaaccaagtgaatata 82061  T
Q  339 taatttattgaatgaaattga 359  Q
    || | | ||||||||| ||||    
T  82062 tattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 80036 - 80174
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  80036 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 80135  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||||||||||| ||||  ||||||||||| ||| ||||    
T  80136 cgcttaagcgaactgagtgttagtcagcctttttctgaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 30374 - 30194
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||| |||||||  |||| | || | ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||| |    
T  30374 agcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttct 30275  T
Q  171 gaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 251  Q
    ||| ||||||||||||||| |||||| | | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30274 gaa-ttttgcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 252 - 403
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  252 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 351  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  352 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  412 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 468  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 4217 - 4377
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgt 134  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |    
T  4217 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccat 4316  T
Q  135 cgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  4317 cgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 73 - 386
Target Start/End: Complemental strand, 65577 - 65265
Alignment:
Q  73 cgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttga 172  Q
    |||||||| ||||||| ||||||  ||   ||||||||||||||||||||||||| | ||||| |||||||| ||    |||||||||||| ||||||||    
T  65577 cgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttagtcagccactttttga 65478  T
Q  173 atttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaag 271  Q
    | |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||  || |||| | | | ||||||||||| ||||      
T  65477 a-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaatcctactaaaacaca 65380  T
Q  272 ctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcata 371  Q
     |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |||||| ||  | ||     
T  65379 ttggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaacttgatgcattagtatg 65280  T
Q  372 attataattaattgt 386  Q
    ||||| |||||||||    
T  65279 attattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 340
Target Start/End: Complemental strand, 1572 - 1274
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    |||||||||||||| || ||||||||||||||||| ||   ||||||| ||||||  ||   |||| |||||||||||||||||| | | || |||||||    
T  1572 tctgtcagaagttcacttaagcgaaccgtgagcgagccagtagcgagcggaaccccaactctctgtcagccggtcgcttaagcgagccagccttcgctta 1473  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccc 239  Q
    ||||||    | ||||||||||| ||||||| | | | | ||||||||| |||| | | | ||||||||| ||||||||||| ||  ||| ||||||||     
T  1472 agcgaacaaggtcttagtcagccactttttgga-tgtcgtttcgtgcactagggaatccttttgagcattttaaaatgtttctttccactggtataacct 1374  T
Q  240 ttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatat 339  Q
    ||||| | | | |  | ||||| |  ||||    ||| ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| ||||    
T  1373 ttgtaaatgca-ctaattcctaatgaaacacatgggtaatcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatat 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 10829 - 10610
Alignment:
Q  16 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||| |||||||||| |||||||||||||||    
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagacttactgtaagccggtc 10741  T
Q  116 gcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaa 214  Q
    |||||||||| ||| ||||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  ||     
T  10740 gcttaagcgagctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaac 10642  T
Q  215 atgtttcctttaacttgtataacccttgtata 246  Q
    ||||  | ||||||||||||||||||| ||||    
T  10641 atgtcccttttaacttgtataacccttatata 10610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 1343 - 1446
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgct 118  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 1442  T
Q  119 taag 122  Q
    ||||    
T  1443 taag 1446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 888 - 542
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  |||||| ||| ||||||   |||||  ||   ||||||||||    
T  888 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 789  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    ||||||||||||||| | ||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | | |||||||||     
T  788 gtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatccttttgagcatta 691  T
Q  211 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgaga 310  Q
     |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||  |||    
T  690 aaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtgaa-tttgaaga 593  T
Q  311 tgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    ||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  592 tgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 923 - 875
Alignment:
Q  39 attctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 86  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  923 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 16303 - 16083
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| || ||| ||| ||||||||||||||| || |||||||  |||||||||| ||||||| ||||||  || | ||||||||||    
T  16303 gaacccgtaagcgaaaaatcaatttcattatgtcagaagttcgcttaaccgaaccgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccg 16204  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 210  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| |||||| | | |||||||||     
T  16203 gtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggatccttttgagcattt 16106  T
Q  211 taaaatgtttcctttaacttgta 233  Q
    | ||||||| | || ||||||||    
T  16105 ttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 1322 - 1117
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    ||||||||||||||||| |||||||||||||  || || | ||||||| ||| ||  ||   |||| |||||||||||||||||| | | ||||||||||    
T  1322 tctgtcagaagttcgcttaagcgaaccgtgattgagccattagcgagcggaaacccaactctctgtgagccggtcgcttaagcgagccagccgtcgctta 1223  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccc 239  Q
    ||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| ||||||||||| || |||||||||||||     
T  1222 agcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttgtataacct 1124  T
Q  240 ttgtata 246  Q
    |||||||    
T  1123 ttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 103 - 361
Target Start/End: Complemental strand, 116308 - 116052
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 200  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | |     
T  116308 ctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatcctt 116211  T
Q  201 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 300  Q
    ||||| ||| ||||||||||| || ||| ||||||||| || ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||    
T  116210 ttgagtattttaaaatgtttctttcaacctgtataacctttatatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtga 116112  T
Q  301 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    | |||||||||||||||||||||||||||||||| ||||| | | ||||||||| ||||||    
T  116111 a-ttttgagatgattgagtatgaaatcaagtgaacatatactatgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 129217 - 129393
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctcttttt 170  Q
    |||||||||| ||||||| ||||||  || | |||| |||||||||||||||||| | | |||||||||||||||||   | ||||||||||| ||||||    
T  129217 agcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccacttttt 129316  T
Q  171 gaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    ||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129317 gaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 116388 - 116325
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttg-attctgtcagaagttcgctcaagcgaaccgtgagcga 75  Q
    ||||| || ||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||    
T  116388 gaacccgtaagcgaaaaatcatttttcattctgtcagaagttcgctcaagcgaaccgttagcga 116325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 18961 - 19166
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    ||||||||||||||||| ||||||||||||||||| || | ||||||| ||||||  ||   |||| |||| ||||||||| ||| | | ||||| | ||    
T  18961 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaaccccaactgtctgtgagccagtcgcttaaccgagccagccgtctccta 19060  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccc 239  Q
    ||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| |||||||     
T  19061 agcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataacct 19159  T
Q  240 ttgtata 246  Q
    |||||||    
T  19160 ttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 493588 - 493800
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||   ||||  |||  || |||||||||||||| ||| || ||||||||||||| ||    
T  493588 gttcgctcaagcgaactgtgagcgaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 493687  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtatagg 248  Q
    ||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| ||| | ||||||||| |||| |||||||||| ||||||||||    
T  493688 agccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 493786  T
Q  249 tatcagaatcctact 263  Q
     |||| |||||||||    
T  493787 catca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  355 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  454 atgtagatatacacaggtt 472  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 525204 - 525062
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--cttc 200  Q
    ||||||| ||||||||||||||||| | || ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | ||    
T  525204 ctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccatc 525107  T
Q  201 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
     |||||||||| ||||||||| || ||||||||||||| |||||||    
T  525106 -tgagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 3854 - 3975
Alignment:
Q  52 ttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgag 151  Q
    |||||| ||||||||||  ||||||||||||  |||| ||||||||||  ||||||||||||||||||||||||||||  |||||||||||||||||       
T  3854 ttcgcttaagcgaaccgcaagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttga 3953  T
Q  152 ccttagtcagcctctttttgaa 173  Q
    |||||||||||| |||||||||    
T  3954 ccttagtcagccactttttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 134960 - 134867
Alignment:
Q  35 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 128  Q
    |||||||||||||  | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  134960 tttgattctgtcaagaattcgcttaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 15521 - 15856
Alignment:
Q  12 agaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagcc 111  Q
    |||||| || ||||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||       ||    |||||| ||   || |||| |    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaac-------ga----aacccaaactctctataagac 15609  T
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcatt 209  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||    
T  15610 ggtcgcttaagcgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatt 15706  T
Q  210 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgag 309  Q
      |||||||||| || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||| ||| |||    
T  15707 taaaaatgtttctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaa-tttggag 15804  T
Q  310 atgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    |||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  15805 atgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 121406 - 121200
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccg-taagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctt 139  Q
    |||| ||||||||||||  |||||||||||||||||||  | ||||||| |||| |  ||   |||||||||||| |||||||||| | | || ||||||    
T  121406 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 121307  T
Q  140 aagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    ||||||||   | ||||||||||| ||||||| | ||||||||||||||| |||| | | | ||||||||| ||||||||||| || |||||||||||||    
T  121306 aagcgaagaaggtcttagtcagccactttttg-acttttgcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 121208  T
Q  239 cttgtata 246  Q
     |||||||    
T  121207 tttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 132283 - 132077
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccg-taagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctt 139  Q
    |||| ||||||||||||  |||||||||||||||||||  | ||||||| |||| |  ||   |||||||||||| |||||||||| | | || ||||||    
T  132283 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 132184  T
Q  140 aagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    ||||||||   | ||||||||||| ||||||| | ||||||||||||||| |||| | | | ||||||||| ||||||||||| || |||||||||||||    
T  132183 aagcgaagaaggtcttagtcagccactttttg-acttttgcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 132085  T
Q  239 cttgtata 246  Q
     |||||||    
T  132084 tttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 17661 - 17492
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtga 150  Q
    ||||||||||| || |||  ||||||| || |||||||  |||||| || | ||||||||||||||||||||||| | | || |||||||||||||||||    
T  17661 gttcgctcaagagacccgcaagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtga 17562  T
Q  151 gccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 220  Q
    ||||| ||||||| |||| |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17561 gccttggtcagccactttctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 581 - 752
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccg 112  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||| |||||       ||||    |||||  || | ||||||||||    
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcga-------gcga----aaccccaactttctgtaagccg 669  T
Q  113 gtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 196  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  670 gtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 196  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 6983 - 6907
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  6983 agcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 340
Target Start/End: Complemental strand, 1815 - 1607
Alignment:
Q  131 ccgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaac 228  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||    
T  1815 ccgtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaac 1718  T
Q  229 ttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatca 328  Q
    |||||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||    
T  1717 ttgtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaacca 1619  T
Q  329 agtgaatatata 340  Q
    ||||||||||||    
T  1618 agtgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 11112 - 11324
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||   ||||  ||| ||| ||||||||||||||  || || ||||||||||||| ||    
T  11112 gttcgctcaagcgaactgtgagcgaaccgtgagcgagcgagaaccacaaccttttgtgagctggtcgcttaagcgagatacccttcgcttaagcgaactg 11211  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtatagg 248  Q
    ||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||||||| ||||||||||    
T  11212 agccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgtataactcttgtatagg 11310  T
Q  249 tatcagaatcctact 263  Q
     |||| |||||||||    
T  11311 catca-aatcctact 11324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 24131 - 24342
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtg 149  Q
    |||||||||||||||| | |||||||| || ||| |||  ||| ||| ||||  ||| ||| |||||||||||||| ||| || ||||||||||||  ||    
T  24131 gttcgctcaagcgaactgcgagcgaactgtgagcaagcgagaatcca-accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatg 24229  T
Q  150 agccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtatagg 248  Q
    |||||||||||| |||||| ||||  |||||||||||||| |||||| | | |||||  || | || |||||| |||| |||||||||||||||| ||||    
T  24230 agccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggacccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtagg 24328  T
Q  249 tatcagaatcctact 263  Q
     |||| |||||||||    
T  24329 catca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 24070 - 24106
Alignment:
Q  51 gttcgctcaagcgaaccgtgagcgaaccgtaagcgag 87  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24070 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 24106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 51749 - 51552
Alignment:
Q  41 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgctta 140  Q
    |||| |||||||||||| |||||||||||  ||||||||| |||||||  ||||   ||   || | ||| |||| ||||||||| | | ||||||||||    
T  51749 tctgccagaagttcgcttaagcgaaccgtatgcgaaccgttagcgagcgaaacctcaactctctatgagctggtcacttaagcgagccagccgtcgctta 51650  T
Q  141 agcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 238  Q
    |||||||   | ||||||||||| ||||||||| |||||||| |||||| |||| | | | ||||||||| ||||||||||| || |||||||||||||    
T  51649 agcgaagaaggtcttagtcagccactttttgaa-ttttgctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 51552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 4191 - 4281
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcag 161  Q
    |||||||||||| ||||| |||||||||| |||||||||| | ||||||||||||||||  |||||||||||||||||   ||||||||||    
T  4191 agcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  351 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  351 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  346 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 403  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  412 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 468  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 11569 - 11782
Alignment:
Q  50 agttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagt 148  Q
    ||||||||| |||||||||  ||||| |||| |||||||  ||| ||| || | ||||| || |||||||||||||||||| || ||||||||||||  |    
T  11569 agttcgctcgagcgaaccgcaagcgatccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgaactacccttcgcttaagcgagct 11667  T
Q  149 gagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | || | || | |||| |||| |||||||||||||||||||    
T  11668 gagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattttttaagtttttcttttagcttgtataacccttgtata 11766  T
Q  247 ggtatcagaatcctact 263  Q
    || |||| |||||||||    
T  11767 ggcatca-aatcctact 11782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 361
Target Start/End: Original strand, 102499 - 102787
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| ||||||| ||||||  || | ||||||| ||||||||||||||||| | || |||||||||||||| ||| |||||||| ||| |||||    
T  102499 agcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtcggccactttt 102597  T
Q  170 tgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaac 268  Q
    ||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| ||||||||| || ||||   | | || ||||||   |||    
T  102598 tgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtcctacagaaac 102695  T
Q  269 aagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    |   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  102696 accttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 102787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 34908 - 35010
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| ||||||| |||||   || | ||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |||||    
T  34908 agcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttt 35006  T
Q  170 tgaa 173  Q
    ||||    
T  35007 tgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 34861 - 34917
Alignment:
Q  13 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 69  Q
    ||||| || ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgt 34917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 263
Target Start/End: Complemental strand, 72748 - 72565
Alignment:
Q  79 gtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaattttt 178  Q
    ||||||||||  |||||  ||||  ||| ||| |||||||||||||| ||| || ||||||||||||  ||||||| |||||||| |||| |||||||||    
T  72748 gtaagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaattttt 72650  T
Q  179 gcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 263  Q
    ||||||||||  |||||| | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72649 gcttcgtgcattaggggaccctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 3882 - 3966
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 197  Q
    |||||||||||||| ||| || ||||||||||||| ||||| ||||||||||| ||||||||   ||||||||||||| |||||||    
T  3882 ggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtcagcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 23226 - 23328
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| |||||| |||||||  || | |||| ||||||| || ||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||    
T  23226 agcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttt 23324  T
Q  170 tgaa 173  Q
    ||||    
T  23325 tgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 15509 - 15633
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag-tgagccttagtcagcctctttt 169  Q
    |||||||||| ||||||| ||||||  || | |||| |||| |||||||||| || ||| || |||||||||||||| ||| |||||||||||| |||||    
T  15509 agcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcgcttaagcgaagatga-ccttagtcagccactttt 15607  T
Q  170 tgaatttttgcttcgtgcacgagggga 196  Q
    ||||  ||||| |||||||| ||||||    
T  15608 tgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 15475 - 15524
Alignment:
Q  26 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 75  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcga 15524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 49645 - 49595
Alignment:
Q  19 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 69  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgt 49595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 393  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  394 ctgga 398  Q
    |||||    
T  10049 ctgga 10053  T

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Target: scaffold0107 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 41160 - 41236
Alignment:
Q  71 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaag 147  Q
    ||||||| || ||||||| ||||||  |||| |||| ||||| ||||||||||||||||  ||||||||||||||||    
T  41160 agcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagcgaactagacgtcgcttaagcgaag 41236  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  112 ggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 173  Q
    |||||||||||||| ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  202 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

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Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  294 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 361  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0335 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 3230 - 3372
Alignment:
Q  103 ctgtaagccggtcgcttaagcgaactaaccgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--cttc 200  Q
    ||||||| | ||||||||||||||| | || |||||||||| |||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | ||    
T  3230 ctgtaagacagtcgcttaagcgaaccagccttcgcttaagcaaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccatc 3327  T
Q  201 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 246  Q
    | ||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 t-gagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

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Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 468
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  406 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 468  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

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Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 468
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  406 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 468  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

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