View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7486_low_10 (Length: 305)

Name: NF7486_low_10
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7486_low_10
NF7486_low_10
[»] chr5 (18 HSPs)
chr5 (1-295)||(26072536-26072830)
chr5 (4-290)||(27166157-27166444)
chr5 (23-290)||(18089985-18090254)
chr5 (24-290)||(32228452-32228719)
chr5 (105-290)||(17106569-17106754)
chr5 (24-290)||(33169306-33169573)
chr5 (220-288)||(18148160-18148228)
chr5 (170-290)||(18359462-18359582)
chr5 (229-289)||(24407602-24407662)
chr5 (23-139)||(33385598-33385714)
chr5 (243-288)||(8300627-8300672)
chr5 (22-139)||(25857647-25857764)
chr5 (240-285)||(27766696-27766741)
chr5 (240-288)||(10774101-10774149)
chr5 (220-290)||(42927779-42927849)
chr5 (54-139)||(27766843-27766928)
chr5 (240-281)||(33385816-33385857)
chr5 (222-290)||(8941832-8941900)
[»] chr3 (23 HSPs)
chr3 (1-295)||(17098078-17098373)
chr3 (63-290)||(15312230-15312459)
chr3 (63-290)||(16178596-16178824)
chr3 (91-290)||(50651640-50651840)
chr3 (91-290)||(963455-963655)
chr3 (24-290)||(3140500-3140767)
chr3 (23-137)||(29523969-29524083)
chr3 (23-139)||(12342449-12342565)
chr3 (23-139)||(36801299-36801415)
chr3 (240-290)||(11310641-11310691)
chr3 (240-288)||(11203469-11203517)
chr3 (23-139)||(33496347-33496463)
chr3 (240-290)||(19890326-19890376)
chr3 (240-290)||(48570481-48570531)
chr3 (22-139)||(7031240-7031357)
chr3 (243-288)||(7031462-7031507)
chr3 (240-285)||(29524187-29524232)
chr3 (240-288)||(33496197-33496245)
chr3 (231-285)||(12342660-12342714)
chr3 (240-282)||(30695785-30695827)
chr3 (240-282)||(36801517-36801559)
chr3 (240-286)||(53184979-53185025)
chr3 (23-124)||(26771213-26771314)
[»] chr2 (20 HSPs)
chr2 (132-288)||(15391793-15391950)
chr2 (4-295)||(15917296-15917589)
chr2 (161-290)||(42563113-42563243)
chr2 (240-290)||(12645184-12645234)
chr2 (240-290)||(40176318-40176368)
chr2 (240-290)||(44473006-44473056)
chr2 (23-136)||(11000174-11000287)
chr2 (224-289)||(28252370-28252435)
chr2 (242-290)||(3400632-3400680)
chr2 (240-288)||(33516226-33516274)
chr2 (23-110)||(42563267-42563354)
chr2 (227-290)||(44023010-44023073)
chr2 (242-282)||(13059580-13059620)
chr2 (170-290)||(38604745-38604865)
chr2 (224-290)||(17765388-17765454)
chr2 (243-288)||(11000395-11000440)
chr2 (243-288)||(14439403-14439448)
chr2 (248-284)||(16241529-16241565)
chr2 (248-284)||(17569007-17569043)
chr2 (242-282)||(36930841-36930881)
[»] scaffold0161 (1 HSPs)
scaffold0161 (80-290)||(6290-6501)
[»] chr6 (22 HSPs)
chr6 (1-290)||(18682707-18682998)
chr6 (23-288)||(17330621-17330878)
chr6 (203-289)||(12429037-12429123)
chr6 (27-290)||(20883261-20883522)
chr6 (91-290)||(13937348-13937548)
chr6 (23-139)||(21630333-21630449)
chr6 (23-139)||(15959037-15959154)
chr6 (23-139)||(17606558-17606674)
chr6 (240-290)||(11462063-11462113)
chr6 (236-290)||(14373429-14373483)
chr6 (58-139)||(215203-215284)
chr6 (240-285)||(10929746-10929791)
chr6 (22-139)||(17579304-17579421)
chr6 (240-285)||(17606776-17606821)
chr6 (231-290)||(15959247-15959306)
chr6 (22-137)||(17573878-17573993)
chr6 (240-282)||(215059-215101)
chr6 (82-136)||(12427970-12428024)
chr6 (220-290)||(24767846-24767916)
chr6 (224-290)||(32536543-32536609)
chr6 (240-290)||(33185084-33185134)
chr6 (43-124)||(11462228-11462309)
[»] chr4 (18 HSPs)
chr4 (1-290)||(48242027-48242315)
chr4 (63-290)||(5790356-5790580)
chr4 (1-290)||(19740242-19740532)
chr4 (54-290)||(46145323-46145560)
chr4 (23-139)||(4548443-4548559)
chr4 (240-290)||(55726035-55726085)
chr4 (23-139)||(8360900-8361016)
chr4 (240-290)||(5148309-5148359)
chr4 (170-290)||(17402058-17402178)
chr4 (231-290)||(11587631-11587690)
chr4 (170-285)||(20002371-20002486)
chr4 (240-290)||(36223531-36223581)
chr4 (240-290)||(54483601-54483651)
chr4 (240-285)||(12697466-12697511)
chr4 (23-139)||(12697613-12697729)
chr4 (227-290)||(2822466-2822529)
chr4 (240-288)||(8360750-8360798)
chr4 (248-284)||(14137328-14137364)
[»] chr8 (21 HSPs)
chr8 (92-288)||(12257740-12257941)
chr8 (92-288)||(12265132-12265333)
chr8 (240-290)||(2529534-2529584)
chr8 (23-139)||(37433932-37434048)
chr8 (227-290)||(25090035-25090098)
chr8 (240-290)||(13199771-13199821)
chr8 (236-290)||(34137401-34137455)
chr8 (243-288)||(2169990-2170035)
chr8 (23-136)||(2170143-2170256)
chr8 (243-288)||(20823946-20823991)
chr8 (23-136)||(34137187-34137300)
chr8 (242-282)||(136574-136614)
chr8 (23-135)||(17699286-17699398)
chr8 (242-282)||(18309362-18309402)
chr8 (22-76)||(5181533-5181587)
chr8 (240-282)||(37433788-37433830)
chr8 (23-288)||(43270100-43270366)
chr8 (22-139)||(20824096-20824213)
chr8 (222-290)||(5181317-5181385)
chr8 (240-280)||(17699140-17699180)
chr8 (242-282)||(25890718-25890758)
[»] chr1 (14 HSPs)
chr1 (1-290)||(2490860-2491150)
chr1 (83-290)||(4646342-4646550)
chr1 (170-290)||(6478167-6478292)
chr1 (240-288)||(28351376-28351424)
chr1 (240-290)||(37192369-37192419)
chr1 (224-290)||(47623491-47623557)
chr1 (23-139)||(43388167-43388283)
chr1 (243-288)||(16918254-16918299)
chr1 (239-288)||(23635163-23635212)
chr1 (246-290)||(37297947-37297991)
chr1 (84-139)||(23635008-23635063)
chr1 (239-288)||(23713832-23713881)
chr1 (240-281)||(43388024-43388065)
chr1 (242-282)||(30713323-30713363)
[»] chr7 (5 HSPs)
chr7 (225-295)||(48394547-48394617)
chr7 (27-290)||(37254406-37254670)
chr7 (23-139)||(18530310-18530426)
chr7 (240-290)||(25619107-25619157)
chr7 (243-288)||(18530160-18530205)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 26072830 - 26072536
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  26072830 atctgtttctgtcttgtccttcttttggtgcgttgtggccattggtgtggtcatggctcggtgttgaaggggtcgaatctcaggttatttcagaccattt 26072731  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
     ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26072730 cttgcaatttattcattatgcaggcggtttgaaatcgcggca-tcgttttttcaccttatatggctcctgtgtgtttggattttgtcgaatgatcggaac 26072632  T
Q  200 gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 295  Q
    |||| ||  |||||||||| |||||  || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26072631 gacaagtcattcaggaacaaacaaaattccctaccgaaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgttgtc 26072536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 27166157 - 27166444
Alignment:
Q  4 tgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttttt 103  Q
    |||||||||||| |||  |||| || ||||||||||  ||| || || |||| |||||| |||||||||| || | ||||||||||||||| || || ||    
T  27166157 tgtttctgtcttgtccaactttcggcgcgttgtggcagttgatgcgggcatgacttggttttgaaggggtggactctcaggttatttcagatcacttctt 27166256  T
Q  104 gcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttggattttgtcgaatgatcggaacgac 202  Q
    |||||||  | |||||||||| ||| | |||||||| |  || ||||||||||| |||||||||||| |||||||| | |||| |||||| |  ||  ||    
T  27166257 gcaatttagtaattatgcaggtggtataaaatcgcgacgatcattttttcacctgatatggctcctttgtgtttgggtattgtggaatgaacaaaataac 27166356  T
Q  203 aggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27166357 aggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatg 27166444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 18089985 - 18090254
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    |||||| ||||||||||| |||||  ||   ||||| |||||||| ||||  ||   ||||||||||||| |||| || ||||||||| |||||||||||    
T  18089985 ttttggagcgttgtggcctttggttagggattggctcggtgttgagggggcggagagtcaggttatttcataccacttcttgcaatttattcattatgca 18090084  T
Q  123 ggcggtttgaaatcgcggcattcgtttttt-caccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacaca 220  Q
    || | | | |||||||||| |||||||||| || |  || |||||  | ||||||||| |||||| ||| |||| |||||||| ||| |||||||| ||     
T  18090085 ggtgatcttaaatcgcggcgttcgtttttttcatcagatttggcttttgtgtgtttgggttttgtggaaagatcagaacgacaagttattcaggaatact 18090184  T
Q  221 caaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    || |||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||||||    
T  18090185 catagctctttaccgcatatgttagataaagtaaaatcctattcattgtggtggttgaaggctggtaatg 18090254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 32228719 - 32228452
Alignment:
Q  24 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 123  Q
    ||||||||||||||||| |||||| |  | ||||| |||||||  ||| || |   |||| ||||  |||| ||||| ||||||||| || |||||||||    
T  32228719 tttggtgcgttgtggccgttggtgcgagcttggctaggtgttgttgggatcaagactcagtttataacagatcatttcttgcaatttattaattatgcag 32228620  T
Q  124 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 222  Q
    |  |||||| | |||| | ||| ||||| || || || |||||||| |||||||||||||||| || ||| ||||| || |   | ||||| || | |||    
T  32228619 gttgtttgagagcgcgacgttcctttttccatctaatttggctcctgtgtgtttggattttgtggactgagcggaatgataaagttttcagaaataaaca 32228520  T
Q  223 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  32228519 aagctctctaccgcatatgttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatg 32228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 290
Target Start/End: Original strand, 17106569 - 17106754
Alignment:
Q  105 caatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctccttgtgtttggattttgtcgaatgatcggaacgacag 204  Q
    |||||| |||||||||| || |||||| ||||||||   || |||||||||||||| | |||||||||||||||||| | | |||| |||| || |||||    
T  17106569 caatttattcattatgctggtggtttgcaatcgcggagatcattttttcaccttatttagctccttgtgtttggattatttggaataatcgcaatgacag 17106668  T
Q  205 gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||| || || || | |||||| |||||||| ||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  17106669 gttatttagaaataaacaaagttctctaccacaactgttagataaagttaaatcctatttgttgtggtggttgaaagatagtaatg 17106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 33169573 - 33169306
Alignment:
Q  24 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 123  Q
    |||| ||||||||||||  ||||| |  | |||||||||||||  || ||||||  |||| | ||  ||||||||||| |||||||| || |||||||||    
T  33169573 tttgatgcgttgtggccgatggtgcgagcttggcttggtgttgttggagtcgaaactcagttcataacagaccattttctgcaatttattaattatgcag 33169474  T
Q  124 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 222  Q
    | ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  33169473 gtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 33169374  T
Q  223 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
     |||||| |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  33169373 tagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 33169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 18148160 - 18148228
Alignment:
Q  220 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||| | || || |||||||||||||||||||| || || |||||||||||||||||||||||    
T  18148160 acaaagctctattccacatatgttagataaagtaaaatcatactctttgtggtggttgaaagctagtaa 18148228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 18359462 - 18359582
Alignment:
Q  170 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 269  Q
    ||||||||| |||| | |||||| ||||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || | ||||    
T  18359462 tgtgtttgggttttatggaatgaacggaatgacaggttatttcggaaccgtcaaagttctataccactattgttagataaagtaaaatcacatactttgt 18359561  T
Q  270 ggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||||    
T  18359562 ggtggttgaaagctagtaatg 18359582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 24407662 - 24407602
Alignment:
Q  229 tctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    |||||||||  |||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  24407662 tctaccgcatttgttagataaagtaaaatcttattccttgtagtggatgagagctagtaat 24407602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 33385598 - 33385714
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||| | || || | ||| | ||| ||||| |||||| |||||||| || |||||| |    
T  33385598 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaatgagtagattctcatgctatctcagatcattttgtgcaatttattgattatgta 33385697  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || || |||||||||||    
T  33385698 ggtggcttgaaatcgcg 33385714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 8300627 - 8300672
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  8300627 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 8300672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 25857647 - 25857764
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  25857647 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 25857746  T
Q  122 aggcggtttgaaatcgcg 139  Q
    ||| || |||||||||||    
T  25857747 aggtggcttgaaatcgcg 25857764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 27766741 - 27766696
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  27766741 tgttagataaagtaaaatcgaataccttgtggtggttgaaagctag 27766696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 10774149 - 10774101
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||  || ||||||||||||||||||| |||||    
T  10774149 tgttagataaagtaaaatcaaataccttgtggtggttgaaagccagtaa 10774101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 42927849 - 42927779
Alignment:
Q  220 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  42927849 acaaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgtaatg 42927779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 27766928 - 27766843
Alignment:
Q  54 tggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 139  Q
    ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | |||||||| | ||||||||||||    
T  27766928 tggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgcaggtgttttgaaatcgcg 27766843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 33385816 - 33385857
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaag 281  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  33385816 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 33385857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 8941832 - 8941900
Alignment:
Q  222 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||| |||||||  | ||| ||||| ||||||| | | ||||||||||| |||||||||||||||    
T  8941832 aaagctctttaccgcatttattacataaattaaaatcatgtaccttgtggtggctgaaagctagtaatg 8941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 17098078 - 17098373
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    |||||||||| |||| ||| |||||||||||||||||| | ||||||  |  |||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  17098078 atctgtttctatcttgtccatcttttggtgcgttgtggtcgttggtgcagatatggctcggtgttgaaggggtcgaatctcaagttatttcagaccattt 17098177  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
     ||||||||| ||||||| ||||| ||||||||||| | |   ||||||||| |||||||||||| ||| ||||||||| |||||| ||||||||||||     
T  17098178 cttgcaatttattcattacgcaggtggtttgaaatcacagatatcgttttttgaccttatatggcccctatgtgtttgggttttgtggaatgatcggaat 17098277  T
Q  200 gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 295  Q
    |||||||| |||||||| | |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  17098278 gacaggttattcaggaataaacaaagatctctaccgcatatgttagatgaagtaaaatcatattccttgtggtggttgaaatctagtaaagatgtc 17098373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 63 - 290
Target Start/End: Complemental strand, 15312459 - 15312230
Alignment:
Q  63 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcgg----cattcgttttttcacctt 158  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| | |||||||||||||||    ||||  ||||||||||||    
T  15312459 gttgaaggggtcgaatctcaggttatttcagaccatttctcgcaatttattcattatgcatgtggtttgaaatcgcggagatcatt--ttttttcacctt 15312362  T
Q  159 atatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaat 257  Q
    ||| ||||||| ||||||||| |||||| |||||||||||| | || ||| || ||||| |  |||||||| |||||  | |||||||||||| ||||||    
T  15312361 ataaggctcctatgtgtttgggttttgtggaatgatcggaatg-caagttatttaggaataagcaaagctcactaccatatatgttagataaactaaaat 15312263  T
Q  258 cttattccttgtggtggttgaaagctagtaatg 290  Q
    | |||||||||||||||||||||||||||||||    
T  15312262 catattccttgtggtggttgaaagctagtaatg 15312230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 63 - 290
Target Start/End: Complemental strand, 16178824 - 16178596
Alignment:
Q  63 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 162  Q
    ||||||||||| |||| ||| ||||| ||||||||||| | ||||||| | |||||| | || |||||||||||| ||   || ||||||||| |||| |    
T  16178824 gttgaaggggttgaatctcaagttatctcagaccatttctcgcaatttatccattatactggtggtttgaaatcgtggatatcattttttcactttattt 16178725  T
Q  163 ggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 261  Q
    ||||||| |||||||||||| | | |||||||||||| |||||||| || ||||||| ||||||||||| ||| | ||||||| ||||||| ||||  ||    
T  16178724 ggctcctatgtgtttggattatttggaatgatcggaatgacaggttatttaggaacaaacaaagctctcaaccactaatgttatataaagttaaattcta 16178625  T
Q  262 ttccttgtggtggttgaaagctagtaatg 290  Q
    ||| |||||||||||||||||||||||||    
T  16178624 ttcattgtggtggttgaaagctagtaatg 16178596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 290
Target Start/End: Original strand, 50651640 - 50651840
Alignment:
Q  91 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 189  Q
    ||||||||| |||||| ||| || |||||||||| ||||||| | | || |  || |||||||| || || ||||| || ||||||||||| |||| |||    
T  50651640 cagaccattgtttgcagtttattaattatgcaggtggtttgagagcacgacggtctttttttcatctaatttggctgctgtgtgtttggatattgtggaa 50651739  T
Q  190 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    ||| ||||| || ||  | ||||| || |  || || ||| |||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50651740 tgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttgttaggtaaagtaaaatcttattccttgtggtggttgaaagctagtaat 50651839  T
Q  290 g 290  Q
    |    
T  50651840 g 50651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 290
Target Start/End: Original strand, 963455 - 963655
Alignment:
Q  91 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 189  Q
    |||||||||||||||||||| || |||||| ||| ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||    
T  963455 cagaccattttttgcaatttattaattatgtaggtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaa 963554  T
Q  190 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    ||| ||||| || ||  | |||   || | | | |||||| |||||||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  963555 tgagcggaatgatagagttttccaaaataaatatagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaat 963654  T
Q  290 g 290  Q
    |    
T  963655 g 963655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 3140767 - 3140500
Alignment:
Q  24 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 123  Q
    |||||||||||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||   ||||||||||||||||||| || |||||||||    
T  3140767 tttggtgcgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataaaagaccattttttgcaatttattaattatgcag 3140668  T
Q  124 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 222  Q
    | | ||||| | | |  | ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  3140667 gtgatttgagagcacaacgttcttttttccaactaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 3140568  T
Q  223 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||| |||||||  ||||||||||||||||||| | || ||||| |||  |||||||||||||||    
T  3140567 aagctctttaccgcatttgttagataaagtaaaatcatgtttcttgtcgtgactgaaagctagtaatg 3140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 29523969 - 29524083
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  29523969 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctcataatatctcagatcattttgtgcaatttattgaatatgca 29524068  T
Q  123 ggcggtttgaaatcg 137  Q
    || ||||||||||||    
T  29524069 ggtggtttgaaatcg 29524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 12342449 - 12342565
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||| |||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  12342449 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaagaggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 12342548  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  12342549 ggtggtttgaaatcgcg 12342565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 36801299 - 36801415
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  36801299 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 36801398  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || || |||||||||||    
T  36801399 ggtggcttgaaatcgcg 36801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 11310641 - 11310691
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  11310641 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagcaatg 11310691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 11203517 - 11203469
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||    
T  11203517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 11203469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 33496463 - 33496347
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||  |||||| |||||||| || | ||||||    
T  33496463 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagctcattttgtgcaatttattgaatatgca 33496364  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || | ||||||||||||    
T  33496363 ggtgatttgaaatcgcg 33496347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 19890376 - 19890326
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  |  |||||||||||||||||||||||||||    
T  19890376 tgttagataaagtaaaatcacacaccttgtggtggttgaaagctagtaatg 19890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 48570481 - 48570531
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  48570481 tgttagataaagtaaaatcaaattccctgtggtggttgaaagctaataatg 48570531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 7031240 - 7031357
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  7031240 cttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatcactttgtgcaatttattgaatatgc 7031339  T
Q  122 aggcggtttgaaatcgcg 139  Q
    ||| || |||||||||||    
T  7031340 aggtggcttgaaatcgcg 7031357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 7031462 - 7031507
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  7031462 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 7031507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 29524187 - 29524232
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  29524187 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 29524232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 33496245 - 33496197
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||||    
T  33496245 tgttagataaagtaaaatcaaataccttgtggtggttgaaagttagtaa 33496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 12342660 - 12342714
Alignment:
Q  231 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||| | |||||||||||||||||||  || |||||| |||||||||||||||    
T  12342660 taccgctattgttagataaagtaaaatcaaataccttgtagtggttgaaagctag 12342714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 30695785 - 30695827
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  30695785 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 30695827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 36801517 - 36801559
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  36801517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 36801559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 53184979 - 53185025
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 286  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||    
T  53184979 tgttagataaagtaaaatcacataccttgtggtggttgaaagttagt 53185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 26771213 - 26771314
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    |||| |||| || |||||||||||| || | ||| |||| ||||||||||| ||   ||||  |||||| ||| |||||||||||||| ||||||| |||    
T  26771213 ttttagtgccttatggccattggtgagggcttggtttggggttgaaggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgca 26771312  T
Q  123 gg 124  Q
    ||    
T  26771313 gg 26771314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 15391950 - 15391793
Alignment:
Q  132 aaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctc 230  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  15391950 aaatcggggcgttcgttttttcaccttatatggctcctgtgtgtttgggttttgtggaatgatcggaacgacaggttgtttaggaacaaacaaagctctc 15391851  T
Q  231 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15391850 taccgcaattgttagataaagttaaatcttattccttgtggtggttgaaagctagtaa 15391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 15917589 - 15917296
Alignment:
Q  4 tgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttttt 103  Q
    ||||| |||||| |||  ||||||| ||||||||||||||||||  | |||||||  |||||| ||||||||  | ||||| ||||||||||||||||||    
T  15917589 tgtttttgtcttgtccaacttttggcgcgttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctcaggctatttcagaccatttttt 15917490  T
Q  104 gcaatttgttcattatgcaggcggtttgaaa-tcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacga 201  Q
    ||||||| ||||||||||||| || | |||| ||||| |  || ||||| ||| |  | || || |  ||||||||| |||||| |||||| ||||| ||    
T  15917489 gcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggttttgtggaatgaacggaatga 15917390  T
Q  202 caggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 295  Q
    |||  | || ||||| | |||||||||| |||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  15917389 cagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatgttgtc 15917296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 42563243 - 42563113
Alignment:
Q  161 atggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatct 259  Q
    ||||||||| ||| ||||| |||||| ||||||  |||| || ||  | |||||||| | ||||| |||||| | ||| |||||| |||||||||||||     
T  42563243 atggctcctctgtatttgggttttgtggaatgagaggaatgatagagttttcaggaataaacaaaactctcttctgcatatgttaaataaagtaaaatca 42563144  T
Q  260 tattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||||||||||||||    
T  42563143 tattccttgtggtggttgaaagctagtaatg 42563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 12645234 - 12645184
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  12645234 tgttagataaagtaaaatctcataccttgtggtggttaaaagctagtaatg 12645184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 40176368 - 40176318
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  40176368 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaatg 40176318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 44473056 - 44473006
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  44473056 tgttagataaagtaaaatcatattctttgtggtggttgaaagctaataatg 44473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 11000174 - 11000287
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  11000174 ttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 11000273  T
Q  123 ggcggtttgaaatc 136  Q
    || || ||||||||    
T  11000274 ggtggcttgaaatc 11000287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 28252435 - 28252370
Alignment:
Q  224 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||    
T  28252435 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaat 28252370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 3400680 - 3400632
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  3400680 ttagataaagtaaaatcatataccttgtggtggttgaaagctattaatg 3400632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 33516226 - 33516274
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  33516226 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaa 33516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 42563354 - 42563267
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaattt 110  Q
    |||||||||||||||| | |||||  || | ||||| ||||| | | ||||||| | ||||||||||||||||||||| |||||||||    
T  42563354 ttttggtgcgttgtggtcgttggtccgggcttggctcggtgtagtatgggtcgattctcaggttatttcagaccatttcttgcaattt 42563267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 44023073 - 44023010
Alignment:
Q  227 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||| ||  |||||||||||||||||||  || || ||||||||||||||||||||||||    
T  44023073 tctctaccacagttgttagataaagtaaaatcaaataccctgtggtggttgaaagctagtaatg 44023010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 13059620 - 13059580
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  13059620 ttagataaagtaaagttttattccttgtggtggttgaaagc 13059580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 38604745 - 38604865
Alignment:
Q  170 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 269  Q
    ||||| ||| |||||| |||||| ||||| |||| | | ||||||||   |||||||||| |||| ||  |||| || ||||||||||| |  |  ||||    
T  38604745 tgtgtgtgggttttgtggaatgaacggaatgacacgctattcaggaatcaacaaagctctataccacagttgttggaaaaagtaaaatcatgctttttgt 38604844  T
Q  270 ggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||||    
T  38604845 ggtggttgaaagctagtaatg 38604865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 17765388 - 17765454
Alignment:
Q  224 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||| |||| ||| ||||||| ||||||||||| | ||| |||||| |||| |||||||||||||    
T  17765388 agctctttaccacaattgttagacaaagtaaaatcatcttctttgtgggggttaaaagctagtaatg 17765454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 11000395 - 11000440
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||| |||||| | || |||||||||||||||||||||||||    
T  11000395 tagataaattaaaatttcataccttgtggtggttgaaagctagtaa 11000440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 14439448 - 14439403
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||    
T  14439448 tagataaagtaaaatcacaaaccttgtggtggttgaaagctagtaa 14439403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 16241565 - 16241529
Alignment:
Q  248 aaagtaaaatcttattccttgtggtggttgaaagcta 284  Q
    |||||||| |||||||||||||||||| |||||||||    
T  16241565 aaagtaaagtcttattccttgtggtggctgaaagcta 16241529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 17569007 - 17569043
Alignment:
Q  248 aaagtaaaatcttattccttgtggtggttgaaagcta 284  Q
    |||||||||| |||||| |||||||||||||||||||    
T  17569007 aaagtaaaatattattctttgtggtggttgaaagcta 17569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 36930881 - 36930841
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  36930881 ttagataaagtaaaatactattcattgtggtggttgaaagc 36930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 290
Target Start/End: Original strand, 6290 - 6501
Alignment:
Q  80 tcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttgg 178  Q
    |||| |||||||| |||| || ||||||||| ||||||||||||| | | |||||||||||| |||||| |||||| | || ||| ||||| ||||||||    
T  6290 tcagattatttcaaaccacttcttgcaatttattcattatgcaggtgatctgaaatcgcggcgttcgttctttcacttgatttgggtcctttgtgtttgg 6389  T
Q  179 attttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttga 278  Q
     |||||| |||  |||||||||||||||| |||||||| |  || |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  6390 gttttgtggaaatatcggaacgacaggttattcaggaataaccatagctctttaccgcatatgttagataaagtaaaatcttattcattgtggtggttga 6489  T
Q  279 aagctagtaatg 290  Q
    ||||||||||||    
T  6490 aagctagtaatg 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18682707 - 18682998
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    |||||||| |||||| ||| | |||||||||| ||||||| |||||   ||| ||||||||  | |  |||||||||| |||||||||||||||||||||    
T  18682707 atctgtttttgtcttgtccgtattttggtgcgctgtggccgttggttcagtcttggcttggcatagttggggtcgaatctcaggttatttcagaccattt 18682806  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
     ||||||||  || |||||||||| ||||||| ||||||    |||||||||||||||||||||||| | ||| ||| | | |||| |||||| || ||     
T  18682807 cttgcaattcattaattatgcaggtggtttgagatcgcgatgctcgttttttcaccttatatggctcttatgtatttaggtgttgtggaatgagcgaaat 18682906  T
Q  200 gacag-gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
     | || | | |||||||||| ||||||||| |||||||| |||||||||||||||||||| | ||||||||| ||| ||||||| |||||||    
T  18682907 catagagcttttcaggaacaaacaaagctcgctaccgcatatgttagataaagtaaaatcattttccttgtgctggctgaaagcgagtaatg 18682998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 17330878 - 17330621
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    |||||||||| ||||||| ||| || || ||||||| ||||||| ||    |||   ||||||||||||||||||||||||||||||| ||||||||| |    
T  17330878 ttttggtgcgctgtggcctttgatgcgggcatggctcggtgttgcagacaccgagagtcaggttatttcagaccattttttgcaatttattcattatgta 17330779  T
Q  123 ggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacac 221  Q
    || | | |||  || |||| |||||||||||| ||||| | |||||| ||||||||| |||||| ||| |||||||| ||         |||||| | ||    
T  17330778 ggtgttctgacctctcggcgttcgttttttcatcttatttagctcctgtgtgtttgggttttgtggaaggatcggaatga---------caggaataaac 17330688  T
Q  222 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    | ||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  17330687 atagctctctatcgcatatgttagataaagtaaaatcatattctttgtggtggttgaaagttagtaa 17330621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 12429037 - 12429123
Alignment:
Q  203 aggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    ||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  12429037 aggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtagttgaaagctagtaat 12429123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 20883261 - 20883522
Alignment:
Q  27 ggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcg 126  Q
    ||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| |||||||||||| |||||||| || | |||||||| |    
T  20883261 ggtgcattgtggcctatggtgcggacatggcttggtgtcgaaggggtagattctcatgctatctcagaccattttgtgcaatttattgaatatgcaggtg 20883360  T
Q  127 gtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaag 225  Q
    | |||||||| || |  || || |||||  | || ||||| |  ||||| ||| |||| | |||  || |||| |||||||| ||  |||||   |||||    
T  20883361 gcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggttttatggaa--at-ggaatgacaggttatttcggaaccgtcaaag 20883457  T
Q  226 ctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
     ||| |||| | | |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  20883458 ttctataccactattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 20883522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 290
Target Start/End: Complemental strand, 13937548 - 13937348
Alignment:
Q  91 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 189  Q
    |||||||||||||||||||| || |||||||||| ||| ||| | | || | ||| ||||| || || || |||||  | ||||||||||| |||| |||    
T  13937548 cagaccattttttgcaatttattaattatgcaggtggtatgagagcacgacgttcttttttccatctaatttggcttttgtgtgtttggatattgtggaa 13937449  T
Q  190 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 289  Q
    ||| ||||| || ||  | |||   || | | | |||||| ||| |||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  13937448 tgagcggaatgatagagttttccaaaataaatatagctctttactgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaat 13937349  T
Q  290 g 290  Q
    |    
T  13937348 g 13937348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 21630333 - 21630449
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | ||||||    
T  21630333 ttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgca 21630432  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || | ||||||||||||    
T  21630433 ggtgttttgaaatcgcg 21630449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 15959037 - 15959154
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtg-gtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    ||||||||| || |||||||||||| | | | |||||||| |||||||||||  |   ||||  ||||||||||||||||| ||||||||||||||| ||    
T  15959037 ttttggtgccttatggccattggtgagaggcttggcttggggttgaaggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgc 15959136  T
Q  122 aggcggtttgaaatcgcg 139  Q
    |||  | |||||||||||    
T  15959137 aggttgcttgaaatcgcg 15959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 17606558 - 17606674
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||| | |||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | ||||||    
T  17606558 ttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgca 17606657  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  17606658 ggtggtttgaaatcgcg 17606674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 11462113 - 11462063
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||| ||||||||||||||  || |||||||||||||||||||||||||||    
T  11462113 tgttggataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 11462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 14373429 - 14373483
Alignment:
Q  236 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  14373429 caaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 14373483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 215284 - 215203
Alignment:
Q  58 ttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 139  Q
    |||||||||||||||| || | ||| | ||| ||||| |||||| |||||||| || | |||||||| ||||||||||||||    
T  215284 ttggtgttgaaggggtagattttcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggtttgaaatcgcg 215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 10929746 - 10929791
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  10929746 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 10929791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 17579304 - 17579421
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  17579304 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 17579403  T
Q  122 aggcggtttgaaatcgcg 139  Q
    ||| || |||||||||||    
T  17579404 aggtggcttgaaatcgcg 17579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 17606776 - 17606821
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  17606776 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 17606821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 15959247 - 15959306
Alignment:
Q  231 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||| ||||||||    
T  15959247 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagttagtaatg 15959306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 17573878 - 17573993
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  17573878 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 17573977  T
Q  122 aggcggtttgaaatcg 137  Q
    ||| || |||||||||    
T  17573978 aggtggcttgaaatcg 17573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 215101 - 215059
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  215101 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 215059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 12427970 - 12428024
Alignment:
Q  82 aggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatc 136  Q
    ||||||||||||| || || ||||||||| || |||||||||| |||||||||||    
T  12427970 aggttatttcagatcacttcttgcaatttattaattatgcaggtggtttgaaatc 12428024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 24767846 - 24767916
Alignment:
Q  220 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  24767846 acaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaagcttgtaatg 24767916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 32536609 - 32536543
Alignment:
Q  224 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| || |||||||| ||||||| |||||    
T  32536609 agctctttaccacaaatgttagacaaagtaaaatcatcttctttttggtggttaaaagctattaatg 32536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 33185134 - 33185084
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||||| || || ||| | |||||||||||||||||||||||||    
T  33185134 tgttagataaagtgaattcatatgctttgtggtggttgaaagctagtaatg 33185084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 11462309 - 11462228
Alignment:
Q  43 tggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcagg 124  Q
    ||||| || ||||||||||||| |||||||| || | ||| ||||| ||||| |||||| |||||||| || | ||||||||    
T  11462309 tggtgcgggcatggcttggtgtcgaaggggtagattctcatgttatctcagatcattttgtgcaatttattgaatatgcagg 11462228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 48242315 - 48242027
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    ||||||||||| ||| ||| |||| ||||||| | ||| | || ||| || | |||||  | ||||||||||| |||| |||||||||||||||| ||||    
T  48242315 atctgtttctgacttgtccatcttatggtgcgctttggtcgttagtgcgggcgtggctcagagttgaaggggttgaatctcaggttatttcagacaattt 48242216  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
     | ||||||| | |||||||| || ||||| ||| |||     || ||||| ||||||||||||||||| |||||||||||| | | ||||||||||||     
T  48242215 ctcgcaatttatccattatgctggtggtttaaaaccgcatatatcattttt-caccttatatggctcctatgtgtttggattatatggaatgatcggaat 48242117  T
Q  200 gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||| ||| || | ||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  48242116 gacatgttatttaagaacaaacaaagctctc-accacatatgttagataaagtaaaatcatattccttgtgttggttgaaagttagtaatg 48242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 5790356 - 5790580
Alignment:
Q  63 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 162  Q
    ||||||||||  |||| ||||||||| ||||||||||| | ||||||| | |||||||| || |||||| ||||||||   || |||||||||||||| |    
T  5790356 gttgaaggggctgaatctcaggttatctcagaccatttctcgcaatttatccattatgctggtggtttgcaatcgcggagatcattttttcaccttattt 5790455  T
Q  163 ggctcctt-gtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 261  Q
    | |||||| |||||| |||| | | |||||||||||| |||| |||    ||||||| |||||| |||||||| ||| |||||||| |||| ||||| ||    
T  5790456 gactcctttgtgttttgattatttggaatgatcggaatgacatgtt----aggaacaaacaaagttctctaccacaactgttagatcaagttaaatccta 5790551  T
Q  262 ttccttgtggtggttgaaagctagtaatg 290  Q
    ||| |||||||||||||||||||||||||    
T  5790552 ttcgttgtggtggttgaaagctagtaatg 5790580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 19740242 - 19740532
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    |||| ||| |||||| |||||  ||||||||||||||| |  ||||| |  | ||||||||||| |  |||||||||  |||| ||||  ||||||||||    
T  19740242 atctatttttgtcttgtccttactttggtgcgttgtggtcgatggtgcgagcttggcttggtgtggttggggtcgaaactcagtttatagcagaccattt 19740341  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
     || |||||| || |||||| ||| ||||||| | |||  ||||| |||||  | || || |||||| | |||||||||||||||| |||||| |||||     
T  19740342 cttacaatttattaattatgtaggtggtttgagagcgcatcattcctttttctatctaatttggctcttgtgtgtttggattttgtggaatgagcggaat 19740441  T
Q  200 gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    || ||  | ||||| || | ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  19740442 gatagagttttcagaaataaacaaagctctctatcgcatatgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 19740532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 290
Target Start/End: Complemental strand, 46145560 - 46145323
Alignment:
Q  54 tggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttc 153  Q
    |||||||||||||  |||||||||  |||| | ||  |||||||||||||||||||| || |||||||||| ||| ||| | | |||| ||| ||||| |    
T  46145560 tggcttggtgttgttggggtcgaaactcagttcataacagaccattttttgcaatttattaattatgcaggtggtatgagagcacggcgttcttttttcc 46145461  T
Q  154 accttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagt 252  Q
    | || || |||||  | ||||||||||| |||| |||||| ||||| || ||  | ||| | || | ||| |||||| |||||||  |||||||||||||    
T  46145460 atctaatttggcttatgtgtgtttggatattgtggaatgagcggaatgatagagttttctgaaataaacacagctctttaccgcatttgttagataaagt 46145361  T
Q  253 aaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||| | |||||| || ||| |||||| ||||||||    
T  46145360 aaaatcatgttccttatgatggatgaaagttagtaatg 46145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 4548443 - 4548559
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||||||  |||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  4548443 ttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 4548542  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  4548543 ggtggtttgaaatcgcg 4548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 55726035 - 55726085
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  55726035 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 55726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 8361016 - 8360900
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| | |||||| || | ||||||    
T  8361016 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgttcaatttattgaatatgca 8360917  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  8360916 ggtggtttgaaatcgcg 8360900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 5148359 - 5148309
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  5148359 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 5148309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 17402058 - 17402178
Alignment:
Q  170 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 269  Q
    ||||||||  |||||| |||||| ||||| || ||| | || || |||| | |||||||| |||| || |||||||||||||||||||| | ||| ||||    
T  17402058 tgtgtttgagttttgtggaatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagataaagtaaaatcatcttctttgt 17402157  T
Q  270 ggtggttgaaagctagtaatg 290  Q
    ||| ||| || ||||||||||    
T  17402158 ggtagttaaaggctagtaatg 17402178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 11587631 - 11587690
Alignment:
Q  231 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  11587631 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 11587690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 20002486 - 20002371
Alignment:
Q  170 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 269  Q
    ||||||||| |||| | ||| || ||||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || ||||||    
T  20002486 tgtgtttgggttttattgaaggaacggaatgacaggttatttcggaactgtcaaagttctataccactattgttagataaagtaaaatcacataccttgt 20002387  T
Q  270 ggtggttgaaagctag 285  Q
    ||||||||||||||||    
T  20002386 ggtggttgaaagctag 20002371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 36223531 - 36223581
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||||||||||| ||||||||||| | | |||||||||||||||    
T  36223531 tgttagataaagtaaaatcatattccttgtgatagctgaaagctagtaatg 36223581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 54483601 - 54483651
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  || ||||||||||| |||||||||||||||    
T  54483601 tgttagataaagtaaaatcaaataccttgtggtggctgaaagctagtaatg 54483651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 12697511 - 12697466
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 285  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  12697511 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 12697466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 12697729 - 12697613
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| || ||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| || || || ||| |||||||| || | ||||||    
T  12697729 ttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctccgatcactttgtgcaatttattgaatatgca 12697630  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  12697629 ggtggtttgaaatcgcg 12697613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 2822466 - 2822529
Alignment:
Q  227 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||| ||  ||||||||||||| |||||  ||||  ||||||||||||||||||||||||    
T  2822466 tctctaccacagttgttagataaagtgaaatcaaattctctgtggtggttgaaagctagtaatg 2822529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 8360798 - 8360750
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||  || |||| |||||||||||||| |||||    
T  8360798 tgttagataaagtaaaatcaaataccttatggtggttgaaagccagtaa 8360750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 14137364 - 14137328
Alignment:
Q  248 aaagtaaaatcttattccttgtggtggttgaaagcta 284  Q
    |||||||||| |||||| |||||||||||||||||||    
T  14137364 aaagtaaaatattattctttgtggtggttgaaagcta 14137328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 12257740 - 12257941
Alignment:
Q  92 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 190  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12257740 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12257839  T
Q  191 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 286  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12257840 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12257939  T
Q  287 aa 288  Q
    ||    
T  12257940 aa 12257941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 12265132 - 12265333
Alignment:
Q  92 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 190  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12265132 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12265231  T
Q  191 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 286  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12265232 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12265331  T
Q  287 aa 288  Q
    ||    
T  12265332 aa 12265333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 2529584 - 2529534
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  2529584 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 2529534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 37434048 - 37433932
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | |||||| |||| ||||||||||| | ||| | ||| ||||| |||||| |||||||| || | |||||     
T  37434048 ttttggtgcattgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctcatgctatctcagatcattttgtgcaatttattgaatatgcg 37433949  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  37433948 ggtggtttgaaatcgcg 37433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 25090098 - 25090035
Alignment:
Q  227 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||| ||  |||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  25090098 tctctaccacagttgttagataaagtaaaatcaaattccttgtggtggctgaaagctagtaatg 25090035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 13199821 - 13199771
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||    
T  13199821 tgttagataaagtaaaatctcataccttgtggtggtcgaaagctagtaatg 13199771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 34137401 - 34137455
Alignment:
Q  236 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  34137401 caaatgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagtaatg 34137455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 2170035 - 2169990
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  2170035 tagataaagtaaaatcacataccttgtggtggttgaaagctagtaa 2169990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 2170256 - 2170143
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  2170256 ttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 2170157  T
Q  123 ggcggtttgaaatc 136  Q
    || || ||||||||    
T  2170156 ggtggcttgaaatc 2170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 20823991 - 20823946
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  20823991 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 20823946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 34137187 - 34137300
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||||||||||||| ||   ||||| || |||||||  || ||   ||||  |||||  |||||||||||||||||| |||||||||||    
T  34137187 ttttggtgccttgtggccattggtgagggagtggctaggggttgaagctgttgaccctcagcatattttggaccattttttgcaatttattcattatgca 34137286  T
Q  123 ggcggtttgaaatc 136  Q
    ||  ||||||||||    
T  34137287 ggttgtttgaaatc 34137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 136614 - 136574
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  136614 ttagataaagtaaagttttattccttgtggtggttgaaagc 136574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 17699398 - 17699286
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||| || |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  17699398 ttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 17699299  T
Q  123 ggcggtttgaaat 135  Q
    || || |||||||    
T  17699298 ggtggcttgaaat 17699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 18309362 - 18309402
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  18309362 ttagataaagtaaagttttattccttgtggtggttgaaagc 18309402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 5181587 - 5181533
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcga 76  Q
    |||||||||| |||||||||||||||| | ||||||| ||||| | |||||||||    
T  5181587 cttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggtcga 5181533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 37433830 - 37433788
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  37433830 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 37433788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 43270366 - 43270100
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||| |  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  43270366 ttttggtgcattgtggtctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 43270267  T
Q  123 ggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacac 221  Q
    || || |||||||| || | ||| || |||||  | || ||||| |  ||||||| | | || | |||||| ||||| |||| ||| ||   ||||   |    
T  43270266 ggtggcttgaaatctcgtcgttccttatttcatttaatttggcttcagtgtgtttcggtgttatggaatgaacggaatgacatgttatttcagaaccgtc 43270167  T
Q  222 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||| ||| |||| | | || ||||||||||||||||  || |||||||||| ||||||||||||||    
T  43270166 aaagttctataccactattgctagataaagtaaaatcacataccttgtggtgtttgaaagctagtaa 43270100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 20824213 - 20824096
Alignment:
Q  22 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 121  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| ||| |||| || | |||||    
T  20824213 cttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcgatttattgaatatgc 20824114  T
Q  122 aggcggtttgaaatcgcg 139  Q
    ||| || |||||||||||    
T  20824113 aggtggcttgaaatcgcg 20824096  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 5181385 - 5181317
Alignment:
Q  222 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||| ||| |||| || |||||||||||||||||||| | ||  ||||||||||| |||| ||||||||    
T  5181385 aaagttctttaccacatatgttagataaagtaaaatcatcttatttgtggtggttaaaagttagtaatg 5181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 17699180 - 17699140
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaa 280  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  17699180 tgttagataaagtaaaatcaaataccttgtggtggttgaaa 17699140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 25890758 - 25890718
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  25890758 ttagataaagtaaagttttattctttgtggtggttgaaagc 25890718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 2491150 - 2490860
Alignment:
Q  1 atctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattt 100  Q
    |||| |||||||||| ||| |  |||||||||||||||||  |||||||  | |||||||||||||| |||||||||  |||| | ||  |||||||||     
T  2491150 atctttttctgtcttgtccgtactttggtgcgttgtggccgatggtgtgagcttggcttggtgttgatggggtcgaaactcagttcataacagaccattg 2491051  T
Q  101 tttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaac 199  Q
    |||||| ||| || |||||||||| |||| || | | || |  || ||||| || || || ||||| || ||||||||||| |||| |||||| |||||     
T  2491050 tttgcagtttattaattatgcaggtggttcgagagcacgacgatcttttttccatctaatttggctgctgtgtgtttggatattgtggaatgagcggaat 2490951  T
Q  200 gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    || ||  | ||||| || |  || || ||| |||| ||  |||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  2490950 gatagcgttttcagtaataatcatagttctttaccacatttgttagataaagtaaaatcttattccctgtggtggctgaaagttagtaatg 2490860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 4646342 - 4646550
Alignment:
Q  83 ggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggatt 181  Q
    ||||||||| || || || ||||||||| || |||||| ||| ||| ||||||||||||  ||  ||||||| || ||||| ||| | ||||||||| |     
T  4646342 ggttatttcggatcacttcttgcaatttattaattatgtaggtggtctgaaatcgcggcgatccctttttcatctgatatgactcttgtgtgtttgggta 4646441  T
Q  182 ttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaag 281  Q
    |||| ||| || || ||  | ||||| || |||||   |||||||||| |||  ||  ||||||||||||||||||| ||||| ||||||||||||||||    
T  4646442 ttgtggaacgaacgaaataagaggttatttaggaatcaacaaagctctatactacatctgttagataaagtaaaatcatattctttgtggtggttgaaag 4646541  T
Q  282 ctagtaatg 290  Q
    |||||||||    
T  4646542 ctagtaatg 4646550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 6478292 - 6478167
Alignment:
Q  170 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaa-----atgttagataaagtaaaatcttattc 264  Q
    |||||||||||||||| || ||| ||||| || ||  | ||||| || | ||||||||||||||||||      |||||||||||||||||||| |||||    
T  6478292 tgtgtttggattttgtggactgagcggaatgatagagttttcagaaatagacaaagctctctaccgcatcgcatatgttagataaagtaaaatcatattc 6478193  T
Q  265 cttgtggtggttgaaagctagtaatg 290  Q
    |||||||||| | ||||||| |||||    
T  6478192 cttgtggtggctaaaagctaataatg 6478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 28351424 - 28351376
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  28351424 tgttagataaagtaaaatcatattcattgtggtggttgaaagctagtaa 28351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 37192369 - 37192419
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37192369 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 47623491 - 47623557
Alignment:
Q  224 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  47623491 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 47623557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 43388283 - 43388167
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| ||| | || ||| |||||||| || | ||||||    
T  43388283 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcatatcactttgtgcaatttattgaatatgca 43388184  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || ||||||||||||||    
T  43388183 ggtggtttgaaatcgcg 43388167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 16918254 - 16918299
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  16918254 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 16918299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 23635163 - 23635212
Alignment:
Q  239 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||| |||||  |||||||||||||||| |||||    
T  23635163 atgttagataaagtaaaatcatattctctgtggtggttgaaagcgagtaa 23635212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 37297947 - 37297991
Alignment:
Q  246 ataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||  || |||||||||||||||||||||||||||    
T  37297947 ataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37297991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 23635008 - 23635063
Alignment:
Q  84 gttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 139  Q
    ||||||||||| ||||| ||||||||| || ||||||||||  |||||||||||||    
T  23635008 gttatttcagatcatttcttgcaatttattaattatgcaggtagtttgaaatcgcg 23635063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 23713832 - 23713881
Alignment:
Q  239 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    |||||||||||||||||||| |||||  | |||||||||||||| |||||    
T  23713832 atgttagataaagtaaaatcatattctctatggtggttgaaagcgagtaa 23713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 43388065 - 43388024
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaag 281  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43388065 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 43388024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 30713323 - 30713363
Alignment:
Q  242 ttagataaagtaaaatcttattccttgtggtggttgaaagc 282  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  30713323 ttagataaagtaaaatattattcattatggtggttgaaagc 30713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 48394617 - 48394547
Alignment:
Q  225 gctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 295  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  48394617 gctctctaccgcatatgttagataaaataaaatcatattccttgtggtggttgaaagctagtaatgttgtc 48394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 37254670 - 37254406
Alignment:
Q  27 ggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcg 126  Q
    ||||| ||||||||  ||||| || ||||||||||||| ||||||||  | | ||| | ||| ||||| |||||| |||||||| || | |||||||| |    
T  37254670 ggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtaaattctcatgctatctcagatcattttgtgcaatttattgaatatgcaggtg 37254571  T
Q  127 gtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaag 225  Q
    | ||| |||| || |  || || |||||  |||| ||||| |  ||||||||| |||| | ||||||  |||| | |||||| ||  |||||   |||||    
T  37254570 gcttggaatcccgtcgatctttatttcattttatttggcttcagtgtgtttgggttttatggaatgaatggaatggcaggttatttcggaactgtcaaag 37254471  T
Q  226 ctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
     ||| |||| ||| |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37254470 ttctataccacaattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37254406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 18530426 - 18530310
Alignment:
Q  23 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 122  Q
    ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  18530426 ttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatcagatcattttgtgcaatttattgaatatgca 18530327  T
Q  123 ggcggtttgaaatcgcg 139  Q
    || || |||||||||||    
T  18530326 ggtggcttgaaatcgcg 18530310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 25619157 - 25619107
Alignment:
Q  240 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 290  Q
    |||||||||||||||||||  || |||| ||||||||||||||||||||||    
T  25619157 tgttagataaagtaaaatcacataccttatggtggttgaaagctagtaatg 25619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 18530205 - 18530160
Alignment:
Q  243 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 288  Q
    ||||||||||||||||  || ||||||||||||||||| |||||||    
T  18530205 tagataaagtaaaatcacataccttgtggtggttgaaaactagtaa 18530160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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