View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_12 (Length: 259)
Name: NF7486_low_12
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 52374297 - 52374486
Alignment:
| Q |
42 |
ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcagggccggatcttggaatgtgcaagaa |
141 |
Q |
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| T |
52374297 |
ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcggggacggatcttggaatgtgcaagaa |
52374396 |
T |
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| Q |
142 |
gctcaatggagttgggcctccttaaggtatgtgtctc-nnnnnnntaatttatagtctagtagtactactaagtattaccaaactaatatttttt |
235 |
Q |
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| T |
52374397 |
gctcaatggagttgggcctccctaagatatctgtctcaaaaataataattta-----taatagtactactaagtattaccaaactaatatttttt |
52374486 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 29694084 - 29694147
Alignment:
| Q |
114 |
cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct |
177 |
Q |
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| T |
29694084 |
cagggccgcaccttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatgggtct |
29694147 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 9107786 - 9107844
Alignment:
| Q |
114 |
cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatg |
172 |
Q |
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| T |
9107786 |
cagggccggatctttggaggtgcaaacagctcaatggagttgggcctccccaaggtatg |
9107844 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 20611502 - 20611567
Alignment:
| Q |
112 |
agcagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct |
177 |
Q |
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| T |
20611502 |
agcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgggtct |
20611567 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 36891527 - 36891555
Alignment:
| Q |
190 |
ttatagtctagtagtactactaagtatta |
218 |
Q |
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| T |
36891527 |
ttatagtctagtagtactactaagtatta |
36891555 |
T |
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