View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7486_low_13 (Length: 257)
Name: NF7486_low_13
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2223333 - 2223111
Alignment:
| Q |
18 |
cacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagcttcacaccaatccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223333 |
cacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagcttcacaccaatccaat |
2223234 |
T |
|
| Q |
118 |
ccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223233 |
ccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaa |
2223134 |
T |
|
| Q |
218 |
ccgcaaagaaatcataaccgcac |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2223133 |
ccgcaaagaaatcataaccgcac |
2223111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University