View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_16 (Length: 246)
Name: NF7486_low_16
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 1875074 - 1875284
Alignment:
| Q |
23 |
ctacgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacat |
122 |
Q |
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| T |
1875074 |
ctacgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacat |
1875173 |
T |
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| Q |
123 |
agcgccttaccattggannnnnnngataatgatcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaac |
222 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875174 |
agcgccttaccattggatttttttgataatgatcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaac |
1875273 |
T |
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| Q |
223 |
cacctgatgtc |
233 |
Q |
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||||||||||| |
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| T |
1875274 |
cacctgatgtc |
1875284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 1885363 - 1885515
Alignment:
| Q |
55 |
taagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattggannnnnnngataatga |
154 |
Q |
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||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||| |||||| ||||||| |
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| T |
1885363 |
taagaaatgatcagaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagtgccttacaattggatattttt-ataatga |
1885461 |
T |
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| Q |
155 |
tcaaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcg |
208 |
Q |
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| T |
1885462 |
tcaaggttctctaaatgacaatcctttcgtgacgtttaacattagtgattatcg |
1885515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 1884195 - 1884232
Alignment:
| Q |
23 |
ctacgagccactaaaaaagataagtctcataataagaaa |
61 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
1884195 |
ctacgagccactaaaaaa-ataagtctcataataagaaa |
1884232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3417862 - 3417914
Alignment:
| Q |
25 |
acgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatg |
77 |
Q |
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|||||| ||||||||||| || |||||| ||| ||||||||||||||||||| |
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| T |
3417862 |
acgagcaactaaaaaagagaaatctcatcatagaaaaggatcagaagaatatg |
3417914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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