View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7486_low_18 (Length: 242)

Name: NF7486_low_18

Description: NF7486

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7486_low_18

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 170; E-Value: 2e-91

Query Start/End: Original strand, 40 - 220

Target Start/End: Complemental strand, 919005 - 918827

Alignment:

Q	40	tattattctgtatatagatcatttattaaggaacttaatatatgaatgtcaggaaccaattaatttatataaagcgaacacaataatattcatgtagttt	139	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	919005	tattattctgtatatagatcatttattaaggaacttaatatatgaatgtcaggaaccaattaatttatataaagcgaacacaataatattcatgtagttt	918906	T

Q	140	tgttgagtatatacaccctcatcaaccatgtcacattttaaaataaattacaatattaaacaaattttatataaagggtat	220	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	918905	tgttgag--tatacaccctcatcaaccatgtcacattttaaaataaattacaatattaaacaaattttatataaagggtat	918827	T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 174 - 218

Target Start/End: Complemental strand, 54542000 - 54541956

Alignment:

Q	174	attttaaaataaattacaatattaaacaaattttatataaagggt	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	54542000	attttaaaataaattcaaatattaaacaaattttacttaaagggt	54541956	T

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