View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_19 (Length: 229)
Name: NF7486_low_19
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 17455331 - 17455554
Alignment:
| Q |
6 |
atgtatttctctaaacatgtcgagttgtttgaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcgtattatggattttgcag |
105 |
Q |
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| T |
17455331 |
atgtattgctctaaacatgtcaagttgttgcaatttcaattttcataatttacaactattaaatgttacttctttgatgtgcttattatggattttacag |
17455430 |
T |
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| Q |
106 |
cattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatt |
205 |
Q |
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| T |
17455431 |
cattttccgaagaatgtaattaaagatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatt |
17455530 |
T |
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| Q |
206 |
tggtttttcacaattatgaaatga |
229 |
Q |
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| T |
17455531 |
tggtttttcacaattatgaaatga |
17455554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 17393341 - 17393226
Alignment:
| Q |
110 |
ttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatttggt |
209 |
Q |
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| T |
17393341 |
ttccaaagaatgttatcaaggatttctgcctctgcttcacaaaacatgtcacccttgaatgttgccactgtaaggtataattctaatcattagcttttat |
17393242 |
T |
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| Q |
210 |
ttttcacaattatgaa |
225 |
Q |
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| T |
17393241 |
ttttcacatttatgaa |
17393226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 17461572 - 17461661
Alignment:
| Q |
98 |
ttttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
187 |
Q |
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| T |
17461572 |
ttttgcagaatatttcgaagaatgtcatcaaggatttctgcctttgctttacaaagcatatcaccattgtatgttgccactgcaaggtat |
17461661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 40234861 - 40234789
Alignment:
| Q |
115 |
aagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
187 |
Q |
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| T |
40234861 |
aagaatgtcgttaaggatttctgcctttgctttacaaagcatatcagccttgtatgttgccactgcaaggtat |
40234789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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