View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7486_low_21 (Length: 221)

Name: NF7486_low_21
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7486_low_21
NF7486_low_21
[»] chr2 (2 HSPs)
chr2 (19-205)||(26661422-26661608)
chr2 (19-119)||(6049912-6050013)
[»] chr6 (2 HSPs)
chr6 (19-205)||(21481340-21481526)
chr6 (19-117)||(19701161-19701260)
[»] chr7 (3 HSPs)
chr7 (19-193)||(13331555-13331727)
chr7 (19-193)||(13342470-13342642)
chr7 (36-119)||(33430271-33430355)
[»] chr5 (1 HSPs)
chr5 (19-193)||(5672026-5672198)
[»] chr3 (1 HSPs)
chr3 (22-176)||(15762000-15762154)
[»] chr8 (2 HSPs)
chr8 (19-148)||(32717846-32717975)
chr8 (19-148)||(10637619-10637748)
[»] chr1 (2 HSPs)
chr1 (19-148)||(22893774-22893903)
chr1 (37-119)||(44306129-44306212)
[»] scaffold0586 (1 HSPs)
scaffold0586 (19-117)||(9594-9693)
[»] chr4 (1 HSPs)
chr4 (19-102)||(13893727-13893810)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 26661608 - 26661422
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661608 atggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 26661509  T
Q  119 tctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaagggtaggagaggtat 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26661508 tctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtat 26661422  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 6050013 - 6049912
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-cacaaagatcatgggt 117  Q
    |||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || | |||||||||||||| ||| ||||||||| ||||||    
T  6050013 atggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccacaaagatgatgggt 6049914  T
Q  118 tt 119  Q
    ||    
T  6049913 tt 6049912  T

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Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 21481526 - 21481340
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 118  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21481526 atggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtt 21481427  T
Q  119 tctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaagggtaggagaggtat 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  21481426 tctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcaggaatggcaagggtagaagaggtat 21481340  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 19701260 - 19701161
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-acaaagatcatgggt 117  Q
    ||||||||||||  ||||||||||||||||||||||| |||| ||||||||| ||||| ||| | |||||||||||||| |||| |||||||||||||||    
T  19701260 atggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 13331555 - 13331727
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 118  Q
    |||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  13331555 atggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggtt 13331654  T
Q  119 tctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 193  Q
       ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  13331655 atcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 13342470 - 13342642
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 118  Q
    |||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  13342470 atggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggtt 13342569  T
Q  119 tctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 193  Q
       ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  13342570 atcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 13342642  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 33430271 - 33430355
Alignment:
Q  36 aaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-cacaaagatcatgggttt 119  Q
    |||||||||||||||||||| |||| ||||||||  |||| |||| | |||| || |||||| ||| | |||||||| |||||||    
T  33430271 aaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagcaaacacttgatgaacacctcaaagatcgtgggttt 33430355  T

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Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 5672026 - 5672198
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtt 118  Q
    |||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  5672026 atggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggtt 5672125  T
Q  119 tctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 193  Q
       ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  5672126 atcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 5672198  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 15762000 - 15762154
Alignment:
Q  22 gaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtttct 121  Q
    ||||||||  |||||||||||||||||| ||||| |||| ||||||||||||| || |||| ||||  |||||||| ||| |||||||||||  | |  |    
T  15762000 gaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaaagatcatatgatgtt 15762099  T
Q  122 ttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaat 176  Q
    ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||    
T  15762100 ttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 32717846 - 32717975
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-acaaagatcatgggt 117  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||||||| ||||||    
T  32717846 atggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggt 32717945  T
Q  118 ttctttttatacagaatatcatgggtgaaaa 148  Q
    |||||||| || |||| ||||||||||||||    
T  32717946 ttcttttt-tatagaagatcatgggtgaaaa 32717975  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 10637748 - 10637619
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-acaaagatcatgggt 117  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||||||| ||||||    
T  10637748 atggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggt 10637649  T
Q  118 ttctttttatacagaatatcatgggtgaaaa 148  Q
    |||||||| || |||| ||||||||||||||    
T  10637648 ttcttttt-tatagaagatcatgggtgaaaa 10637619  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 22893903 - 22893774
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-acaaagatcatgggt 117  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||||||||||||||    
T  22893903 atggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagatcatgggt 22893804  T
Q  118 ttctttttatacagaatatcatgggtgaaaa 148  Q
    ||| |||| || |||| ||||||||||||||    
T  22893803 ttcctttt-tatagaagatcatgggtgaaaa 22893774  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 44306212 - 44306129
Alignment:
Q  37 aattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-cacaaagatcatgggttt 119  Q
    |||| |||||||||||||| |||||||||||||| | |||| || | |||||||||||||| ||| ||||||||| ||||||||    
T  44306212 aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccacaaagatgatgggttt 44306129  T

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Target: scaffold0586 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9693 - 9594
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-acaaagatcatgggt 117  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    ||||||||||||| |||| |||||||||||||||    
T  9693 atggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatgaacactacaaagatcatgggt 9594  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 13893727 - 13893810
Alignment:
Q  19 atggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac 102  Q
    |||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || |  ||||||||||||| ||||    
T  13893727 atggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttgatgaacac 13893810  T

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