View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_22 (Length: 211)
Name: NF7486_low_22
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 54900611 - 54900430
Alignment:
| Q |
17 |
aatatgctatcccttttatactataatgttgttgtggtgctctggtacaattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaag |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54900611 |
aatatgctatccctttcatactataatgttgttgtggtgctctgttatgattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaag |
54900512 |
T |
|
| Q |
117 |
atggattctcccatacatgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54900511 |
atggattctcccatacacgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
54900430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 50197389 - 50197208
Alignment:
| Q |
17 |
aatatgctatcccttttatactataatgttgttgtggtgctctggtacaattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaag |
116 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
50197389 |
aatatgatatccctttcatactataatgttgttgtggtgctctgttacaattaagtttcaacttttataagtcttgttgtcacattttctatgcaagaag |
50197290 |
T |
|
| Q |
117 |
atggattctcccatacatgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50197289 |
atggattctcccatacatgtggctttcaattatagctttgcatgtcagctcttttgattcattggctttgcatttaatattc |
50197208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 1175453 - 1175272
Alignment:
| Q |
17 |
aatatgctatcccttttatactataatgttgttgtggtgctctggtacaattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaag |
116 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1175453 |
aatatgctatccctttcatactataatgttgttgtggtgctttgttatgattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaag |
1175354 |
T |
|
| Q |
117 |
atggattctcccatacatgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1175353 |
atggattctcccatacatatggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
1175272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 2785368 - 2785204
Alignment:
| Q |
34 |
atactataatgttgttgtggtgctctggtacaattaagtttcaacttttacaagtcttgctgtcacattttctatgcaagaagatggattctcccataca |
133 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
2785368 |
atactataatgttgttgtggtgctctgttatgattaagtttcaacttttactagtcttgctctcacgttttctatgcaagaagatggattcttccataca |
2785269 |
T |
|
| Q |
134 |
tgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2785268 |
tgtggctttcaattatagctttgcatgccagctcttttgattcattggctttgcatttaatattc |
2785204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 38739221 - 38739115
Alignment:
| Q |
46 |
tgttgtggtgctctggt-acaattaagtttcaacttttacaagtcttgctgtcacattttctatgcaag-aagatggattctcccatacatgtggctttc |
143 |
Q |
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|||||||||||||| || | |||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
38739221 |
tgttgtggtgctcttgttatgattaagtttcaactttcaaaagttttgctgtcacattttctatgcaagaaagatggattctcccgtacatgtggctttc |
38739122 |
T |
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| Q |
144 |
aattata |
150 |
Q |
| |
|
||||||| |
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|
| T |
38739121 |
aattata |
38739115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 20269059 - 20269104
Alignment:
| Q |
152 |
ctttgcatgccagctcttttgattcattggctttgcatttaatatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20269059 |
ctttgcatgccagctcttttgattcattggctttgcatttaatatt |
20269104 |
T |
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