View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_3 (Length: 429)
Name: NF7486_low_3
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 7141161 - 7140766
Alignment:
| Q |
13 |
tggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctct |
112 |
Q |
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| T |
7141161 |
tggacatcaaggctaccactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctct |
7141062 |
T |
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| Q |
113 |
tttcttgatgttttctcacaacattatctaagattttgtctacccttttgtgaattttctcaacannnnnnnncatccctgttagtacatgaataagttt |
212 |
Q |
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| T |
7141061 |
tttcttgatgttttctcacaacattatccaagattttgtctacccttttgtgaattttctcaacattttttttcatccctgttagtacatgaataagttt |
7140962 |
T |
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| Q |
213 |
catcgaaggaaacaaatcgataagctcaagtccacttgaaaccgctaccgcttttctaattaacgacacaaattcttcttgatcctcagatttatcaccc |
312 |
Q |
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| T |
7140961 |
cattgaaggaaacaaatcgataagctcaagtccacttgaaaccgccaccgcttttctaatcaacgacacaaattcttcttgatcctcagatttatcaccc |
7140862 |
T |
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| Q |
313 |
aacgccgctctcaaaataatagaatttatcactgaaaaaattctagtagtgaggttgatttttgagcctgcaaatgacttaattgattcaataaac |
408 |
Q |
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| T |
7140861 |
aacgccgctctcaaaataatagaatttatcactgaaaaaattctagtagtgaggttgatttttgagcctgcaaatgacttaattgattcaataaac |
7140766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 7152976 - 7152832
Alignment:
| Q |
29 |
cactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttct |
128 |
Q |
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| T |
7152976 |
cactttgttggactcgcaaaagaacatctagaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtct |
7152877 |
T |
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| Q |
129 |
cacaacattatctaagattttgtctacccttttgtgaattttctc |
173 |
Q |
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| T |
7152876 |
aataatgttttcaatgattttgtctacacgcttgtgaattttctc |
7152832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 7130801 - 7130752
Alignment:
| Q |
19 |
tcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
68 |
Q |
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| T |
7130801 |
tcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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