View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_4 (Length: 401)
Name: NF7486_low_4
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 45280472 - 45280842
Alignment:
| Q |
12 |
atgaatataaaaatggtgttaaaaacactttagaggcttagagtgtcactatcttggatggtaaaggagatatctcagaacgtacgctgcataacaaatc |
111 |
Q |
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| T |
45280472 |
atgaatataaaaatggtgttaaaaacactttagaggcttagagtgtcactatcttggatggtaaaggagatatctcagaacgtacgctgcataacaaatc |
45280571 |
T |
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| Q |
112 |
aggacgtacgctgcatggtgaagtctttcaaatataaactccaacaaaaattaaacaataaatggaaactagaaagtgacactgtacatggaaggatata |
211 |
Q |
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| T |
45280572 |
aggacgtacgctgcatggtgaagactttcaaatataaactccaacaaaaattaaacaataaatggaaactagaaagtgacactgtacatggaaggatata |
45280671 |
T |
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| Q |
212 |
atttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatatacagaccaatctccacaaatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45280672 |
atttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatatacagaccaatttccacaaatg |
45280771 |
T |
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| Q |
312 |
gtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgta |
382 |
Q |
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| T |
45280772 |
gtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgta |
45280842 |
T |
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