View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7486_low_5 (Length: 381)
Name: NF7486_low_5
Description: NF7486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7486_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 24366711 - 24367077
Alignment:
| Q |
16 |
caatttagacactagcctagaatgtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaatatcaaacatgt |
115 |
Q |
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| T |
24366711 |
caatttagacactagcctagaatgtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaatatcaaacatgt |
24366810 |
T |
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| Q |
116 |
tttgct------------ttctattggtaaggaatgtcatataataccttaaattcagcaaaccacttgtctatcatgtcatcatccacatgagttattt |
203 |
Q |
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| T |
24366811 |
tttgctttctattggtaattctattggtaaggaatgtcatataataccttaaattcagcaaaccacttgtctatcatgtcatcatccacatgagttattt |
24366910 |
T |
|
| Q |
204 |
ttgtatgaagtttctaacaataatcttatgagttatttttgtcnnnnnnnngtttcttgtgtttgtggatttatgtagagatttccacatggtggttttc |
303 |
Q |
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| T |
24366911 |
ttgtatgaagtgtctaacaatgatcttatgagttatttttgtcttttttttgtttcttgtgtttgtggatttatgtagagatttccacatggtggttttc |
24367010 |
T |
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| Q |
304 |
cgaacaactgacacttgagcataggttccgatcaatcgagaaatagaagtcctgttgcaccattcat |
370 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| |
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| T |
24367011 |
cgaacaactgacacttgagcataggttccgatcaagcgagaaatagaagtcgtgttgcatcattcat |
24367077 |
T |
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