View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7487_low_1 (Length: 293)
Name: NF7487_low_1
Description: NF7487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7487_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 22270850 - 22271111
Alignment:
| Q |
15 |
ctgtgctactgagagttgaaaaaatcgcacttggtgattttggtcttgctcgttctgatggacgaaagacggttggaattatggaggattgttgaagctt |
114 |
Q |
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| T |
22270850 |
ctgtgctactgagagttgaaagaatcgcacttggtgattttggtcttgctcgttctgattaacgaaaggcggttggaattatggaggattgttgaagctt |
22270949 |
T |
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| Q |
115 |
gaggaatctcttgattcccttgaactagagtaacctcccctttaggagttggaggaagaacggtggtgttgtgatttctactaagtggagtgatagtgat |
214 |
Q |
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| T |
22270950 |
gaggaatctcttgattcccttgaactagagtaacctcccctttaggagttggaggaagaacggtggtgttatgatttctactaaggggagtgataatgat |
22271049 |
T |
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| Q |
215 |
tttagtaaaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtct |
276 |
Q |
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| T |
22271050 |
tttagtgaaattggcaagtgcatcaaatcgtgcaaagtaataaggtagtaagttaatcgtct |
22271111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 18494564 - 18494626
Alignment:
| Q |
222 |
aaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattg-tctccacagg |
283 |
Q |
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| T |
18494564 |
aaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg |
18494626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 14921131 - 14921207
Alignment:
| Q |
207 |
atagtgattttagtaaaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtctccacagg |
283 |
Q |
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| T |
14921131 |
atagtgattttagataaattggtaagtgcatcaaatcgtacaaaataataaagtaatgagttaatcgtctcctcagg |
14921207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 22512053 - 22512011
Alignment:
| Q |
203 |
agtgatagtgattttagtaaaattggcaagtgcatcaaatcgt |
245 |
Q |
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| T |
22512053 |
agtgatggtgattttagtgaaattggcaagtgcaccaaatcgt |
22512011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 33083616 - 33083662
Alignment:
| Q |
225 |
ttggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaat |
271 |
Q |
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| T |
33083616 |
ttggcaagtgcatcaaatcgtacaaagtaatagagtagtaagttaat |
33083662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 6177955 - 6177894
Alignment:
| Q |
222 |
aaattggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtctccacagg |
283 |
Q |
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| T |
6177955 |
aaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttttttgtcttcacagg |
6177894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 19603023 - 19602967
Alignment:
| Q |
227 |
ggcaagtgcatcaaatcgtgcaaagtaacaaggtagtaagttaattgtctccacagg |
283 |
Q |
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| T |
19603023 |
ggcaagtgcatcaaatagtaccaagtaataaagcagtaagttaatcgtctccacagg |
19602967 |
T |
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