View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7487_low_2 (Length: 256)
Name: NF7487_low_2
Description: NF7487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7487_low_2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 33776878 - 33776636
Alignment:
| Q |
14 |
gtgagatgaaattaaccttgatcttatcctcacagcacatccaccaattcgaaaatcgcaaagattcgtccactttgtagactgaaacacgttgatttgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33776878 |
gtgagatgaaattaaccttgatcttatcctcacagcacctccaccaattcgaaaatcgcaaagattcgtccactttgtagactgaaacacgttgatttgc |
33776779 |
T |
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| Q |
114 |
aaccctttgtatggaaactgtggtgtttgtgacaccatcgacggtgactggtggttgtaatttaacaatcaaagaggaaagaagttctggtttaatctga |
213 |
Q |
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| T |
33776778 |
aaccctttgtatggaaactgtggtgtttgtgacgccatcgacggtgactggtggttgtaatttaacaatcaaagaggaaagaagttctggtttaatctga |
33776679 |
T |
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| Q |
214 |
tatggtgattaagggttttgtcccatagctgatttgctttatc |
256 |
Q |
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| T |
33776678 |
tatggtgattaagggttttgtaccatagctgatttgctttatc |
33776636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 1569478 - 1569720
Alignment:
| Q |
14 |
gtgagatgaaattaaccttgatcttatcctcacagcacatccaccaattcgaaaatcgcaaagattcgtccactttgtagactgaaacacgttgatttgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569478 |
gtgagatgaaattaaccttgatcttatcctcacagcacctccaccaattcgaaaatcgcaaagattcgtccactttgtagactgaaacacgttgatttgc |
1569577 |
T |
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| Q |
114 |
aaccctttgtatggaaactgtggtgtttgtgacaccatcgacggtgactggtggttgtaatttaacaatcaaagaggaaagaagttctggtttaatctga |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569578 |
aaccctttgtatggaaactgtggtgtttgtgacgccatcgacggtgactggtggttgtaatttaacaatcaaagaggaaagaagttctggtttaatctga |
1569677 |
T |
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| Q |
214 |
tatggtgattaagggttttgtcccatagctgatttgctttatc |
256 |
Q |
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| T |
1569678 |
tatggtgattaagggttttgtaccatagctgatttgctttatc |
1569720 |
T |
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