View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7488_low_5 (Length: 201)
Name: NF7488_low_5
Description: NF7488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7488_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 26996099 - 26996264
Alignment:
| Q |
17 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26996099 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcac |
26996198 |
T |
|
| Q |
117 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
182 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26996199 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
26996264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 26721655 - 26721820
Alignment:
| Q |
17 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |
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| T |
26721655 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26721754 |
T |
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| Q |
117 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
182 |
Q |
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|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721755 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
26721820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 26991404 - 26991569
Alignment:
| Q |
17 |
aatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatctctcac |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |
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| T |
26991404 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26991503 |
T |
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| Q |
117 |
aactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
182 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991504 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
26991569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 27002369 - 27002539
Alignment:
| Q |
12 |
cgaagaatattatcaactcactaacaacaagaaatcagttaacctagctctctcactaggtactcaaattttggacgagaattactctttaggaaaatct |
111 |
Q |
| |
|
|||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| |||||||||||| |
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| T |
27002369 |
cgaaaaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatct |
27002468 |
T |
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| Q |
112 |
ctcacaactaaccaaattcttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
182 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27002469 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaac |
27002539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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