View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_high_1 (Length: 821)
Name: NF7489_high_1
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 625
Target Start/End: Complemental strand, 33040227 - 33039600
Alignment:
| Q |
14 |
atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagagcaaaattgtaannnnnnngttagaggggtaaaatcacaactttttaaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |
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| T |
33040227 |
atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagggcaaaattgttatttttttgttagaggggtaaaatcacaactttttaaa |
33040128 |
T |
|
| Q |
114 |
ggttaaggagtcaaaaatgcatttaagcatttgatctatcattctcccttcaatttagtgcataaactttttaatataataaatagtccccgaataatat |
213 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33040127 |
ggttagggagtcaaaaatgcatttaagcatttaatctatcattctcccttcaatttagtgcataaactttttaatataataaatagtccccgaataatat |
33040028 |
T |
|
| Q |
214 |
gaaattctgaaattttgtccctaatgtttatcaaaaatctgtcaactta---------------atagaagggactaaattcaagtattatatacacttc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33040027 |
gaaattctgaaattttgtccctaatgtttatcaaaaatctgtcaacttagttcctaacaacttaatagaagggactaaattcaagtattatatacacttc |
33039928 |
T |
|
| Q |
299 |
aaggactaataagtatatttacaagtttaatgactaaattgggcatcttaannnnnnnnnnnnngaggaaaaattgggcatcttaacataagggactaaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33039927 |
aaggactaataagtatatttacaagtttaatgactaaattgggcatcttaatttatttttttt-gaggaaaaattgggcatcttaacataagggactaaa |
33039829 |
T |
|
| Q |
399 |
ttgaagtatcaatgactaacaagtatttacaagtttaaagactaaattggagagtgataattcaaggattaaattaattaatggcttaatcatttttcac |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33039828 |
ttgaagtatcaatgactaacaagtatttacaagtttaaagactaaattggagagtgataattcaaggattaaattaattcatggcttaatcatttttcac |
33039729 |
T |
|
| Q |
499 |
aatttccatttgaatctaagtcaaaatgttaactttgtatttcatggtcgacattgtagaatttcaatattgtccgaccaattaaaaagttttttaaaat |
598 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33039728 |
aattttcatttgaatctaagtcaaaatgttaactttgtatttcatggtcgacattgtagaacttcaatattgtccgaccaattaaaaagttttttaaaat |
33039629 |
T |
|
| Q |
599 |
aagtg--ataataacttaatctttgtatt |
625 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
33039628 |
aagtgatataataacttaatctttgtatt |
33039600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 698 - 804
Target Start/End: Complemental strand, 33039527 - 33039421
Alignment:
| Q |
698 |
gtagtgcatcgttgacaagtattgctatttgtatcaaataaccatattgttttaaaccttcaattatctatatttccttttccttgcaaaaggattgtaa |
797 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33039527 |
gtagtgcatcgttgacaagcattgctatttgtatcaaataaccatattgttttaaacctttaattatctatatttccttttccttgcaaaaggattgtaa |
33039428 |
T |
|
| Q |
798 |
gagacat |
804 |
Q |
| |
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||||||| |
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|
| T |
33039427 |
gagacat |
33039421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 33041221 - 33041144
Alignment:
| Q |
149 |
ctatcattctcccttcaatttagtgcataaactttttaa-tataataaatagtccccgaataatatgaaattctgaaat |
226 |
Q |
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|||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| |
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| T |
33041221 |
ctatcattctcc-ttcaatttggtgcataaactttttaaatataataagtagtccccaaatgatatgaaattctgaaat |
33041144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 9620684 - 9620730
Alignment:
| Q |
95 |
aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaagc |
141 |
Q |
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||||||| |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
9620684 |
aaaatcataactttttaaaggttaaggagtcacaaatgtctttaagc |
9620730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 22057463 - 22057521
Alignment:
| Q |
14 |
atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagagcaaaatt |
72 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||||| | ||||||| ||| |||||||| |
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| T |
22057463 |
atattttcatatatatagagtcaaaagaacacatttccttaaggatcgagcgcaaaatt |
22057521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 4104875 - 4104829
Alignment:
| Q |
95 |
aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaagc |
141 |
Q |
| |
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|||||||||| |||||||| ||||||| |||||||||||| |||||| |
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| T |
4104875 |
aaaatcacaattttttaaaagttaaggtgtcaaaaatgcacttaagc |
4104829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 31016283 - 31016230
Alignment:
| Q |
22 |
atatagatagagtcaaaagatc-acattttcctaaggatagagagcaaaattgt |
74 |
Q |
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|||||||||||||||||||| |||||||| ||| |||||||||||||||||| |
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| T |
31016283 |
atatagatagagtcaaaagaaagacattttcttaaagatagagagcaaaattgt |
31016230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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