View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_high_17 (Length: 423)
Name: NF7489_high_17
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 55694690 - 55695066
Alignment:
| Q |
13 |
aatattagtccaatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctctt |
112 |
Q |
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| T |
55694690 |
aatattagtccaatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctctt |
55694789 |
T |
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| Q |
113 |
nnnnnnnttaattgattctactacattgtattattgttatttaaagcagaacttcaatcaaaaatatctatcaagttatttgaagataagacatatgaat |
212 |
Q |
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| T |
55694790 |
gaaaaaat-aattgattctactacattgtatttttattactagaagcagcacttcaatcaaaaatatctatcaagttatttgaatataagacatatgaat |
55694888 |
T |
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| Q |
213 |
tatgaagtatgatttgatcatgttccctatgagttacttggtcatataaacataacaaaacatgttgagcattggtggttaatgaaaat-ggattctgca |
311 |
Q |
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| T |
55694889 |
tatgaagtatgttttgatcatgttccctatgagttacttggtcatataaacataacaaaatatgtttagcattagtgtttaatgataatgggatattgca |
55694988 |
T |
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| Q |
312 |
ggttgaaacacagcaagtagcaacaaccgtgacagaaaatgaaacagttgagttaaccaaggtcgaggaaacaacacc |
389 |
Q |
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| T |
55694989 |
ggttgaaacacagcaagcaccaacaactgtgacagaaaaggaaacagttgaggtaaccaaggtcgaggaaacaacacc |
55695066 |
T |
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