View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_high_18 (Length: 407)
Name: NF7489_high_18
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 50764730 - 50765110
Alignment:
| Q |
20 |
agcctgcacgactgttcccggaagagaaat-atgatttttgttttctctaggtatataaaccaatagatcaaagggataacacattaatcaatcaaaaag |
118 |
Q |
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| T |
50764730 |
agcctgcacgactgttccgggaagagaaattatgatttttgttttctctaggtatataaaccaatagatcaaagggataacacattaatcaatcaagaag |
50764829 |
T |
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| Q |
119 |
gcatttatactgtcgtatataacaacctgtaagcttccataagggcattataagcatatacatcaggttcaagtcctgcttcttgcatctgctcaaatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50764830 |
gcatttatactgtcgtatataacaacctgtaagcttccataagggcattataagcatatacatcaggttcaagtccagcttcttgcatctgctcaaatat |
50764929 |
T |
|
| Q |
219 |
ttcttctgctttctcacataatccctctcttgcaaatgcattcactagagcagtatatgtgcaaatattaggtttgcacttttggcttaacatttcatcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50764930 |
ttcttctgctttctcacataatccctctcttgcaaatgcattcactagagcagtatatgtgcaaatattaggtttgcatttttggcttaacatttcatcg |
50765029 |
T |
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| Q |
319 |
aacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatttcaattccattaacataattgtgtctctgct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50765030 |
aacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatttcaattccattaacataattgtgtctgtgct |
50765110 |
T |
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