View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_high_24 (Length: 317)

Name: NF7489_high_24
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_high_24
NF7489_high_24
[»] chr8 (5 HSPs)
chr8 (13-301)||(31875949-31876237)
chr8 (32-124)||(31584271-31584363)
chr8 (258-301)||(31562185-31562228)
chr8 (39-124)||(31550406-31550491)
chr8 (233-301)||(31551117-31551185)
[»] chr2 (2 HSPs)
chr2 (211-301)||(18234404-18234493)
chr2 (164-247)||(18229798-18229882)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 31875949 - 31876237
Alignment:
Q  13 aatattgcaaacattgtatatatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgacca 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31875949 aatattgcaaacattgtatatatatttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagactcatgagcaaaatatgtttgacca 31876048  T
Q  113 agcatcacatataagtagccaacagaatgataaaatttggactcgtcggggtattttgtttttcaatacctttgtttgtgaaaatgttgaatacatgata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31876049 agcatcacatataagtagccaacagaatgataaaatttggactcgtcggggtattttgtttttcaatacctttgtttgtgaaaatgtcgaatacatgata 31876148  T
Q  213 ctaatcaaagggtaatgcagactcagaaatcatttccatatatactaacattcaacaccacttctgtttcaccatatttgagtagtttt 301  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31876149 ctaatcaaagggtaatgcagactcagaaatcatttccataaatactaacattcaacaccacttctgtttcaccatatttgagtagtttt 31876237  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 31584271 - 31584363
Alignment:
Q  32 atatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat 124  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||| ||||| ||| |||| | |||||||||||||    
T  31584271 atatatttacattaggattttgatgaattaatgtgtttcagcattaccttggcggattcatgcgcaaagtatttttgcctaagcatcacatat 31584363  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 31562228 - 31562185
Alignment:
Q  258 taacattcaacaccacttctgtttcaccatatttgagtagtttt 301  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  31562228 taacattcaacaccacttctgtttgaccatatttgagtagtttt 31562185  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 31550491 - 31550406
Alignment:
Q  39 tacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat 124  Q
    ||||||||| ||||||||| |||| ||||||  |||||||||||| ||| ||||||||||| | | |||| | ||||||| |||||    
T  31550491 tacattaggattttgaagagttaacgtgttttggcattaccttggcagactcatgagcaaagtgtttttgcctaagcatcgcatat 31550406  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 31551185 - 31551117
Alignment:
Q  233 actcagaaatcatttccatatatactaacattcaacaccacttctgtttcaccatatttgagtagtttt 301  Q
    |||||| |||||||| || | | | ||||||||||||||| ||  |||||||| |||||||||||||||    
T  31551185 actcagcaatcatttgcacaaagattaacattcaacaccaattaggtttcaccttatttgagtagtttt 31551117  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 18234493 - 18234404
Alignment:
Q  211 tactaatcaaagggtaatgcagactcagaaatcatttccatatatactaacattcaacaccacttctgtttcaccatatttgagtagtttt 301  Q
    |||||||||| |||||||||| | ||| ||| ||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  18234493 tactaatcaa-gggtaatgcaaattcataaaccatttgcacaaagactaacattcaacaccacttctgtttcaccatatttgagtagtttt 18234404  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 18229882 - 18229798
Alignment:
Q  164 tattttgtttttcaatacctttgtttgtgaaaatgttgaatacatgatactaatc-aaagggtaatgcagactcagaaatcattt 247  Q
    ||||||||| ||||||| ||||||||||||||| ||  ||| ||  ||||||||| |||||||||  || |||||||||||||||    
T  18229882 tattttgttattcaatagctttgtttgtgaaaaggtcaaatgcaaaatactaatcaaaagggtaagacaaactcagaaatcattt 18229798  T

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