View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_high_25 (Length: 298)
Name: NF7489_high_25
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5988549 - 5988270
Alignment:
| Q |
1 |
tcagataaatccaatcaacagaatttgtatcccacacatcatccagtactagcagaaaatttgcaatgcttaaaatttgttgcagtttcactaatagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5988549 |
tcagataaatccaatcaacagaatttgtatcccacacatcatccagtagtagcaaaaaatttgtagtgcttaaaatttgttgcagtttcactaatagaag |
5988450 |
T |
|
| Q |
101 |
attgcggtgcatgtcactggtggcatttatttttgtattggaaaattcaagaggttgagaattcagattaccactactgattccctgtgaagtaatagat |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5988449 |
attgcggtgcatgtcactggtgtcattaatttttgtattggaaaattcaagaggttgagaattcagattaccactactgattccctgtgaagtaatagat |
5988350 |
T |
|
| Q |
201 |
tcaagaatggtttccaaaaccctgaaaatatcaaaatcttttgagacaactacccaccctctaagcccaaatctttcctt |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
5988349 |
tcaagaatagtttccaaaaccctgaaaatatcaaaatcttttgagacaactacccaccctctcaccccaaatctttcctt |
5988270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 11491352 - 11491410
Alignment:
| Q |
186 |
tgtgaagtaatagattcaagaatggtttccaaaaccctgaaaatatcaaaatcttttga |
244 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11491352 |
tgtgaagtaatagattctagaatggtttcataaaccctgaaaatatcaaaatcatttga |
11491410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 7492509 - 7492569
Alignment:
| Q |
186 |
tgtgaagtaatagattcaagaatggtttccaaaaccctgaaaatatcaaaatcttttgaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
7492509 |
tgtgaagtaatagattcaagaatggtttcaaaaacattcaaattatcaaaatcttttgaga |
7492569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 18387862 - 18387823
Alignment:
| Q |
186 |
tgtgaagtaatagattcaagaatggtttccaaaaccctga |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18387862 |
tgtgaagtgatagattcaagaatggtttccaaaaccctga |
18387823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 17311673 - 17311635
Alignment:
| Q |
189 |
gaagtaatagattcaagaatggtttccaaaaccctgaaa |
227 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17311673 |
gaagtaacagattcaagaatggtttccaaaaccctgaaa |
17311635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University