View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_high_28 (Length: 291)
Name: NF7489_high_28
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 44614857 - 44614619
Alignment:
| Q |
35 |
agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614857 |
agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc |
44614758 |
T |
|
| Q |
135 |
cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614757 |
cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttc |
44614658 |
T |
|
| Q |
235 |
ttttgattcaaattccttttgtcggctctcgaaatgctt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614657 |
ttttgattcaaattccttttgtcggctctcgaaatgctt |
44614619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 44624067 - 44623811
Alignment:
| Q |
16 |
attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttt |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
44624067 |
attattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattt |
44623968 |
T |
|
| Q |
116 |
tcaatttgctgcatttttccttcaaattcctctacctttgtttcaaa---cattttcactcgacctttaaattcctcctcttctgactggaactccttca |
212 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||| |||||| |||||| | ||||||| || ||||||||||||| |||| ||| ||||||||| ||| |
|
|
| T |
44623967 |
tcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaactccatca |
44623868 |
T |
|
| Q |
213 |
ctcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaat |
269 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
44623867 |
ctcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaat |
44623811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 39473637 - 39473731
Alignment:
| Q |
179 |
ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgctt |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || | ||||| ||||||||||||||| | ||||| || |||||||||||||||| |
|
|
| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgctt |
39473731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 39152636 - 39152579
Alignment:
| Q |
17 |
ttattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
74 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||||||| ||| ||||||||||||| |
|
|
| T |
39152636 |
ttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaact |
39152579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 39215457 - 39215415
Alignment:
| Q |
169 |
cactcgacctttaaattcctcctcttctgactggaactccttc |
211 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
39215457 |
cacttgacctttaaattcctcctgttttgactggaactccttc |
39215415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
| Q |
25 |
ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
74 |
Q |
| |
|
|||||||| ||| ||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
39468392 |
ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact |
39468343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 39137657 - 39137561
Alignment:
| Q |
177 |
ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgctt |
273 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||| | | |||| ||| |||||||| || ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
39137657 |
ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaaaatgctt |
39137561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 45342112 - 45342049
Alignment:
| Q |
16 |
attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt |
79 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
45342112 |
attattcagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt |
45342049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 40347507 - 40347458
Alignment:
| Q |
220 |
ttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaat |
269 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaat |
40347458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 16113357 - 16113303
Alignment:
| Q |
20 |
ttcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
74 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
16113357 |
ttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact |
16113303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University