View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_high_31 (Length: 276)

Name: NF7489_high_31
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_high_31
NF7489_high_31
[»] chr1 (3 HSPs)
chr1 (38-191)||(52380051-52380204)
chr1 (7-73)||(52379973-52380039)
chr1 (211-263)||(9961728-9961780)
[»] chr7 (3 HSPs)
chr7 (216-264)||(34751540-34751588)
chr7 (207-265)||(11833947-11834005)
chr7 (216-264)||(31287261-31287309)
[»] chr5 (3 HSPs)
chr5 (216-264)||(36568257-36568305)
chr5 (211-263)||(41455425-41455477)
chr5 (216-262)||(5175125-5175171)
[»] chr3 (2 HSPs)
chr3 (205-264)||(46252918-46252977)
chr3 (216-264)||(55467121-55467169)
[»] chr4 (2 HSPs)
chr4 (204-262)||(1564529-1564587)
chr4 (207-263)||(29233341-29233397)
[»] chr2 (1 HSPs)
chr2 (227-263)||(12884926-12884962)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 52380051 - 52380204
Alignment:
Q  38 agttggaccagtgaagaaacgagaaaaaacccgatttcacaacggcgtaagaggaatcagagacaaagtatgcaggttctgttattgtctccaagtggtc 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52380051 agttggagcagtgaagaaacgagaaaaaacccgatttcacaacggcgtaagaggaatcagagacaaagtatgcaggttctgttgttgtctccaagtggtc 52380150  T
Q  138 atggtgaagaccgaagccagtggacttcgggtgttgaaaatcgaaccaattcaa 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52380151 atggtgaagaccgaagccagtggacttcggatgttgaaaatcgaaccaattcaa 52380204  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 52379973 - 52380039
Alignment:
Q  7 gtcaaaacattgttttttaaattcatgcaacagttggaccagtgaagaaacgagaaaaaacccgatt 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379973 gtcaaaacattgttttttaaattcatgcaacagttggaccagtgaagaaacgagaaaaaacccgatt 52380039  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 9961728 - 9961780
Alignment:
Q  211 tgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattc 263  Q
    |||| ||||||||| ||||||||||||||| ||||| |||||  |||||||||    
T  9961728 tgaaccaatccaaactgaaactgcaaaaaaccgcatttggtttggatgtattc 9961780  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 34751588 - 34751540
Alignment:
Q  216 caatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattca 264  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||||    
T  34751588 caatccaaatcgaaaccgcaaaaaatcgcatttggttcggatgtattca 34751540  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 11833947 - 11834005
Alignment:
Q  207 aaattgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattcat 265  Q
    |||||||| |||||||||| ||||| ||||||| | |||| |||||| |||||||||||    
T  11833947 aaattgaaccaatccaaatcgaaaccgcaaaaagttgcatttggttcggatgtattcat 11834005  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 31287261 - 31287309
Alignment:
Q  216 caatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattca 264  Q
    |||||||||  ||||| |||||||||||||||| |||| ||||||||||    
T  31287261 caatccaaaccgaaaccgcaaaaaatcgcatatagttcggatgtattca 31287309  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 36568305 - 36568257
Alignment:
Q  216 caatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattca 264  Q
    |||||||||  |||||||||||||| ||||| |||||||||||||||||    
T  36568305 caatccaaaccgaaactgcaaaaaaccgcatttggttcagatgtattca 36568257  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 41455477 - 41455425
Alignment:
Q  211 tgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattc 263  Q
    |||| |||||||||  |||||||||||||||||||| |||||| |||||||||    
T  41455477 tgaaccaatccaaaccgaaactgcaaaaaatcgcatttggttcggatgtattc 41455425  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 5175125 - 5175171
Alignment:
Q  216 caatccaaattgaaactgcaaaaaatcgcatatggttcagatgtatt 262  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||    
T  5175125 caatccaaatcgaaaccgcaaaaaatcgcatttggttcggatgtatt 5175171  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 46252918 - 46252977
Alignment:
Q  205 gtaaattgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattca 264  Q
    |||||| ||| ||||||||||||||| ||||||||| ||||| || ||| ||||||||||    
T  46252918 gtaaatcgaatcaatccaaattgaaattgcaaaaaaccgcatttgattcggatgtattca 46252977  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 55467121 - 55467169
Alignment:
Q  216 caatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattca 264  Q
    |||||||||||||||| |||||||| ||||| |||||  ||||||||||    
T  55467121 caatccaaattgaaaccgcaaaaaaccgcatttggtttggatgtattca 55467169  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 1564529 - 1564587
Alignment:
Q  204 cgtaaattgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtatt 262  Q
    |||||| |||| |||| ||||| |||||||||||||| ||||| |||||| ||||||||    
T  1564529 cgtaaactgaatcaattcaaatcgaaactgcaaaaaaccgcatttggttcggatgtatt 1564587  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 29233397 - 29233341
Alignment:
Q  207 aaattgaaacaatccaaattgaaactgcaaaaaatcgcatatggttcagatgtattc 263  Q
    |||| ||| |||||||||  |||||||| ||||||||||| ||||| ||||||||||    
T  29233397 aaatcgaaccaatccaaaccgaaactgcgaaaaatcgcatttggtttagatgtattc 29233341  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 12884962 - 12884926
Alignment:
Q  227 gaaactgcaaaaaatcgcatatggttcagatgtattc 263  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  12884962 gaaaccgcaaaaaatcgcatttggttcagatgtattc 12884926  T

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