View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_high_38 (Length: 240)
Name: NF7489_high_38
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_38 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 16183370 - 16183137
Alignment:
| Q |
18 |
cacactgtgagcagataattaaactcagctatatataggtaacaatcctagccaaaccaggaatgcatccaaagtcaaaaggaatcaat----------- |
106 |
Q |
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| T |
16183370 |
cacactgtgagcagataatcaaactcagctatatataggtaacaatcctagccaaatcaggaatgcatccaaagtcaaaaagaatcaatttagcatcaat |
16183271 |
T |
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| Q |
107 |
ggggtatatgcctaattaatcataagcattcaccaatgtcaacgcttcacaagcactattttttgtaacttaataaaattttaagttggtgtctaattaa |
206 |
Q |
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| T |
16183270 |
ggggtatatgcctaattaatcataagcattcaccaatgtcaacgcttcacaagcactattttttgtaacttaataaaattttaagttggactctaattaa |
16183171 |
T |
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| Q |
207 |
tttatagttttgaagtaatatatccttaatacat |
240 |
Q |
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| T |
16183170 |
tttatagtttttaagtaatatattcttaatacat |
16183137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 16177711 - 16177875
Alignment:
| Q |
18 |
cacactgtgagcagataattaaactcagctatatatag--gtaacaatcctagccaaaccaggaatgcatccaaagtcaaaaggaatca----------- |
104 |
Q |
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| T |
16177711 |
cacactgtgagcagataattaaactcagctatatatatacgtaacaatcccagccaagccaggtatgcctcatgagttaaaaagaatcaatttagcatca |
16177810 |
T |
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| Q |
105 |
atggggtatatgcctaattaatcataagcattcaccaatgtcaacgcttcacaagcactattttt |
169 |
Q |
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| T |
16177811 |
atggggtatatgcctcattaatcataaacattcatcaatgtcaacccttcacaagcactattttt |
16177875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 16177909 - 16177951
Alignment:
| Q |
198 |
tctaattaatttatagttttgaagtaatatatccttaatacat |
240 |
Q |
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| T |
16177909 |
tctaattaatttatactttttaagtaatatatacttaatacat |
16177951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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