View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_high_42 (Length: 205)
Name: NF7489_high_42
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_42 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 25802209 - 25802018
Alignment:
| Q |
1 |
agtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802209 |
agtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatt |
25802110 |
T |
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| Q |
101 |
tgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctc |
192 |
Q |
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| T |
25802109 |
tgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctc |
25802018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 25816302 - 25816111
Alignment:
| Q |
1 |
agtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatt |
100 |
Q |
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|||||||| |||||||||| |||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
25816302 |
agtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcacaaatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatt |
25816203 |
T |
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| Q |
101 |
tgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctc |
192 |
Q |
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| T |
25816202 |
tgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcgttgtatttcattgttctgtttcttctc |
25816111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 112322 - 112507
Alignment:
| Q |
1 |
agtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||| |
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| T |
112322 |
agtgtggtggaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctatttctttgcagccatcgcatt |
112421 |
T |
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| Q |
101 |
tgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgttt |
186 |
Q |
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| T |
112422 |
tgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctgttt |
112507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 12530663 - 12530521
Alignment:
| Q |
29 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
128 |
Q |
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||||||| || ||||| || ||| |||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| ||| | ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
129 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
171 |
Q |
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|||||| |||||| | ||||| ||||| ||||||||| ||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctcattgtat |
12530521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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