View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_high_6 (Length: 603)
Name: NF7489_high_6
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 39803085 - 39803467
Alignment:
| Q |
8 |
ttggagttaaaaatgcgagaaatgggaaaattcgtaccgattgttctgtgctttaatcaagtgtattatgtaagctggggaagtcacaaagggtgactat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39803085 |
ttggagttaaaaatgcgagaaatgggaaaattcgtaccgattgttctgtgctttaatcaagtgtataatgtaagctggggaagtcacaaagggtgactat |
39803184 |
T |
|
| Q |
108 |
agattatttgttaattaatgttaataaatttgtttgccaacaaattaagagtggtttggatgttnnnnnnnnggaagataaggggagagaaaaagttgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
39803185 |
agattatttgttaattaatgttaataaatttgtttgccaacaaattaagagtggtttggatgttaaaaaaa-ggaagataaggggagagaaaaaattgag |
39803283 |
T |
|
| Q |
208 |
cttttctttgatgtaatttaagttccaaataattcagtgtcccctatatttatgaactttgaattgtttattgaaaatgaataacagtgctgctaaaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39803284 |
cttttctttgatgtaatttaagttccaaataattcagtgtcccctatatttatgaactttgaattgtttattgaaaatgaataagagtgctgctaaaatg |
39803383 |
T |
|
| Q |
308 |
tatatgatttgtttcttaattttgtatatgaacttaatactgagcattttatttcattgcattaattaaggattaaaatagact |
391 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39803384 |
tttatgatttgtttcttaattttgtatatgaacttaatattgagcattttatttcattgcattaattaaggattaaaattgact |
39803467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 430 - 557
Target Start/End: Original strand, 39803460 - 39803587
Alignment:
| Q |
430 |
aatttactcaccccaaaattgtaagttcaactttttgttatggatgatatgaacttctattaatgatcattgaatctttatgactacattaatcctagta |
529 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39803460 |
aattgactcaccacaaaattgtaagttcaacttttttttatggatgatatgaacttctattaatgatcattgaatctttatgactacattaatcctagta |
39803559 |
T |
|
| Q |
530 |
agtctctaaagctcaacccacttaaaca |
557 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
39803560 |
agtctctaaagctcaacccactcaaaca |
39803587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University