View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_high_8 (Length: 594)

Name: NF7489_high_8
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_high_8
NF7489_high_8
[»] chr5 (6 HSPs)
chr5 (16-579)||(35435202-35435765)
chr5 (166-579)||(35421857-35422270)
chr5 (163-466)||(35753119-35753422)
chr5 (301-420)||(35404932-35405051)
chr5 (222-458)||(35365173-35365409)
chr5 (221-460)||(35374714-35374953)
[»] chr8 (1 HSPs)
chr8 (176-473)||(13563658-13563957)
[»] chr7 (1 HSPs)
chr7 (229-435)||(29624772-29624978)
[»] chr2 (3 HSPs)
chr2 (301-348)||(30633713-30633760)
chr2 (301-348)||(30661442-30661489)
chr2 (301-348)||(30670122-30670169)
[»] chr1 (1 HSPs)
chr1 (301-348)||(10411690-10411737)


Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 35435765 - 35435202
Alignment:
Q  16 atgaaatccaaatcatgagctcttccactcccaaaaccattataaccaatggcaaacctctcaagtttgttcaagttccccaaggttggaggtactggcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||    
T  35435765 atgaaatccaaatcatgagctcttccactcccaaaaccattataaccaatgtcaaacctcctaagtttgttcaagtgccccaaggttggaggtactggcc 35435666  T
Q  116 catgaaaattgttaatggatatatcgaaccatttcagaccggtgatatttgatattgacaacggcaaagttccgcttatgtggttctctcccaccaaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435665 catgaaaattgttaatggatatatcgaaccatttcagaccggtgatatttgatattgacaacggcaaagttccgcttatgtggttctctcccaccaaaaa 35435566  T
Q  216 tgatctaagattaggaaaaacaagatgcatatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435565 tgatctaagattaggaaaaacaagatgcatatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaa 35435466  T
Q  316 agagaatgagggatttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggtatatttccttccaatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435465 agagaatgagggatttcacccgaaaaattatttgaacccagatttagatctcttaaatttgataacttacccaaggtataaggtatatttccttccaatt 35435366  T
Q  416 gatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaaggtgggatttgacctaccaaattatttgctccaagaagcaacttattaag 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435365 gatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaaggtgggatttgacctaccaaattatttgctccaagaagcaacttattaag 35435266  T
Q  516 ctgcatcatggaaccaaaccatgaaggaatatttccagtgaattgattgtacaacaagataatt 579  Q
    |||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  35435265 ctgcgtcatggaaccaaaccatgagggaacatttccagtgagttgattgtacaacaagataatt 35435202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 166 - 579
Target Start/End: Complemental strand, 35422270 - 35421857
Alignment:
Q  166 gatattgacaacggcaaagttccgcttatgtggttctctcccaccaaaaatgatctaagattaggaaaaacaagatgcatatttgatggaagagtaccaa 265  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422270 gatattgaacacggaaaagttccgcttatgtggttccctcccaccaaaaatgatctaagattaggaaaaacaagatgcatatttgatggaagagtaccaa 35422171  T
Q  266 ataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagata 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35422170 ataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatc 35422071  T
Q  366 tcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422070 tcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaa 35421971  T
Q  466 ggtgggatttgacctaccaaattatttgctccaagaagcaacttattaagctgcatcatggaaccaaaccatgaaggaatatttccagtgaattgattgt 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||    
T  35421970 ggtgggatttgacctaccaaattatttgctccaagaagcaacttattaagctgcgtcatggaaccaaaccatgagggaacatttccagtgagttgattgt 35421871  T
Q  566 acaacaagataatt 579  Q
    ||||||||||||||    
T  35421870 acaacaagataatt 35421857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 163 - 466
Target Start/End: Complemental strand, 35753422 - 35753119
Alignment:
Q  163 tttgatattgacaacggcaaagttccgcttatgtggttctctcccaccaaaaatgatctaagattaggaaaaacaagatgcatatttgatggaagagtac 262  Q
    |||||||||||  |||| |||||||||||||  | |||| |||| ||||| |||  | ||||| | ||||||||||||| ||||||||||||||||  ||    
T  35753422 tttgatattgaagacggaaaagttccgcttaaattgttccctcctaccaagaattctttaagactgggaaaaacaagattcatatttgatggaagacgac 35753323  T
Q  263 caaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttag 362  Q
    |||| |||||||||    | || |  | |   | ||| || ||||||||||||||||||||||| |||||||| || |||| |||||||| |||| | |     
T  35753322 caaacaattggtttcctgcgagaacaagatattgaatattggatagattgtaaagagaatgaggaatttcacctgacaaatgatttgaactcagagtcaa 35753223  T
Q  363 atatcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttcccaag 462  Q
    || | | ||||||   ||| ||||||| |||||||||||  |||||||||||||||| ||| ||||| |||    |||||| |||||||||||||||||     
T  35753222 atctatcaaattttgcaacctacccaaagtataaggtatggttccttccaattgattccttccaagtattaatcgttggagtgatgaaatatttcccaaa 35753123  T
Q  463 gaag 466  Q
    ||||    
T  35753122 gaag 35753119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 35405051 - 35404932
Alignment:
Q  301 tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggta 400  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||| ||||   |||||| | ||| |||| ||| ||||||| | ||||||||    
T  35405051 tttgataggttgtaaagagaatgagggatttcacctgacaaattatttgaactcagagacagatatgtcaaacttgacaacctacccaaagaataaggta 35404952  T
Q  401 tatttccttccaattgattt 420  Q
    |  ||||||| || ||||||    
T  35404951 tgcttccttcaaagtgattt 35404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 222 - 458
Target Start/End: Complemental strand, 35365409 - 35365173
Alignment:
Q  222 aagattaggaaaaacaagatgcatatttgatggaagagtaccaaataattggttttgcccaaggatgaaaaca-taaatttttgatagattgtaaagaga 320  Q
    |||||| ||||||||||||| |||||||||||||||| |||| ||||| | ||||  ||||| ||| |||| | |  || |||||||| |||||||| ||    
T  35365409 aagattgggaaaaacaagattcatatttgatggaagactaccgaataagttgtttaccccaa-gatcaaaagatttcatatttgataggttgtaaagtga 35365311  T
Q  321 atgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatttgataacttacccaaggtataaggtatatttccttccaattgatt 419  Q
    |||||| |||||||| || |||||||||  ||| ||||  | |||  || ||| |||| ||||||||||| | || ||||||  |||||||||  |||||    
T  35365310 atgaggaatttcacctgacaaattatttccacctagataca-ataaattcaaacttgacaacttacccaaagaatcaggtatgcttccttccaggtgatt 35365212  T
Q  420 tcttgcaagtgttatattttggagggatgaaatatttcc 458  Q
    |  || ||||| |||||||||||| ||||||| ||||||    
T  35365211 ttgtgtaagtgatatattttggagtgatgaaacatttcc 35365173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 460
Target Start/End: Complemental strand, 35374953 - 35374714
Alignment:
Q  221 taagattaggaaaaacaagatgcatatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagaga 320  Q
    ||||||| ||||||||||||| || ||| | ||||||| ||||  |||| | ||||  ||||||    ||||| | ||| |||||||| |||||||||||    
T  35374953 taagattgggaaaaacaagattcagattggttggaagactaccggataagttgtttaacccaagatcaaaaacttgaatatttgataggttgtaaagaga 35374854  T
Q  321 atgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatttgataacttacccaaggtataaggtatatttccttccaattgatt 419  Q
    |||||| |||||||| || ||||||||||||   ||| | | | || || ||| |||| ||| ||||||| | | |||||||  |||||| ||| |||||    
T  35374853 atgaggaatttcacctgacaaattatttgaatgtagaatca-acattttcaaacttgacaacatacccaaagaacaaggtattcttcctttcaagtgatt 35374755  T
Q  420 tcttgcaagtgttatattttggagggatgaaatatttccca 460  Q
    |  | |||||| |||||||||||| ||||||| ||||||||    
T  35374754 ttgtccaagtgatatattttggagtgatgaaacatttccca 35374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 473
Target Start/End: Complemental strand, 13563957 - 13563658
Alignment:
Q  176 acggcaaagttccgcttatgtggttctctcccaccaaaaatgatctaagattaggaaaaacaagatgcatatttgatggaagagtaccaaataattggtt 275  Q
    |||| ||||||||  |||| ||||||||||| ||||| ||| ||  |||||| |||||| |||||| | |||||||||||||| |||| ||||| | |||    
T  13563957 acggaaaagttcccgttatttggttctctccgaccaagaattattcaagatttggaaaatcaagatccgtatttgatggaagactaccgaataacttgtt 13563858  T
Q  276 ttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatt 374  Q
       ||||||    ||||  | ||| ||| |||| ||||||||||||||||| |||||||| || ||||||||||||||  |||| | ||| ||| ||  |    
T  13563857 ccccccaagatctaaaatttgaatatttcataggttgtaaagagaatgaggaatttcacctgacaaattatttgaacctggattca-atagcttcaagct 13563759  T
Q  375 tgataacttacccaaggtataaggtatatttccttcc--aattgatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaaggtggga 472  Q
    ||| ||| ||||||| | |||||||||  ||||||||  || |||||   ||||| |||||| | |||||| || |||||||| ||||||||||||||||    
T  13563758 tgacaacctacccaaagaataaggtatgcttccttccaaaagtgattatatgcaaatgttatgtgttggagagacgaaatattccccaaggaaggtggga 13563659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 229 - 435
Target Start/End: Original strand, 29624772 - 29624978
Alignment:
Q  229 ggaaaaacaagatgcatatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgaggga 328  Q
    |||||| |||||| |||||| ||||||||| |||| ||||||| ||||  ||||||   ||||   | ||  |||||||| ||||||| |||||| ||||    
T  29624772 ggaaaagcaagattcatattcgatggaagactaccgaataatttgtttatcccaagtccgaaatatttaagatttgataggttgtaaatagaatgtggga 29624871  T
Q  329 tttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaag 428  Q
    |||| || || ||||| ||| |||  |||   ||| ||  ||||||||| |||||||| || | ||||||||| ||||||||||| ||||| | ||||||    
T  29624872 tttctcctgacaaattgtttaaacatagagacagaaatactaaatttgacaacttacctaaagaataaggtatgtttccttccaagtgattacgtgcaag 29624971  T
Q  429 tgttata 435  Q
    |||||||    
T  29624972 tgttata 29624978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 30633760 - 30633713
Alignment:
Q  301 tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt 348  Q
    |||||||| ||||| |||||||||||||||||||| || |||||||||    
T  30633760 tttgataggttgtagagagaatgagggatttcacctgacaaattattt 30633713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 30661489 - 30661442
Alignment:
Q  301 tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt 348  Q
    |||||||| ||||| |||||||||||||||||||| || |||||||||    
T  30661489 tttgataggttgtagagagaatgagggatttcacctgacaaattattt 30661442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 30670169 - 30670122
Alignment:
Q  301 tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt 348  Q
    |||||||| ||||| |||||||||||||||||||| || |||||||||    
T  30670169 tttgataggttgtagagagaatgagggatttcacctgacaaattattt 30670122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 10411690 - 10411737
Alignment:
Q  301 tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt 348  Q
    |||||||| ||||| |||||||||||||||||||| || |||||||||    
T  10411690 tttgataggttgtagagagaatgagggatttcacctgacaaattattt 10411737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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